Expression of 1-1-4.4.17.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.980530.728
27DAP/17DAP1.080320.874
39DAP/27DAP2.930980.02
41DAP/39DAP1.876210.074
42DAP/41DAP2.34510.02
43DAP/42DAP1.652950.671
47DAP/43DAP1.445930.349
52DAP/47DAP0.694270.274
57DAP/52DAP1.610620.902

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.897080.308
17DAP/reference1.171120.018
27DAP/reference0.925760.538
39DAP/reference1.165770.301
41DAP/reference1.268570.05
42DAP/reference1.138490.076
43DAP/reference1.115710.596
47DAP/reference1.055070.541
52DAP/reference1.089090.8
57DAP/reference0.892170.124

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.318530.284
27DAP/17DAP0.953540.508
39DAP/27DAP1.43650.054
41DAP/39DAP0.672290.087
42DAP/41DAP1.715490.004
43DAP/42DAP3.363340.013
47DAP/43DAP1.124680.678
52DAP/47DAP0.981460.907
57DAP/52DAP0.718960.132
57DAP/7DAP1.705030.22

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.788610.076
17DAP/reference0.873130.072
27DAP/reference1.043970.664
39DAP/reference1.172570.371
41DAP/reference1.212610.037
42DAP/reference1.309240.1
43DAP/reference1.633750.008
47DAP/reference1.196820.514
52DAP/reference1.567570.007
57DAP/reference1.415720.015

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.863080.503
17DAP/reference0.981490.626
27DAP/reference1.217420.278
39DAP/reference1.198940.602
41DAP/reference1.15760.115
42DAP/reference1.157060.195
43DAP/reference0.834760.186
47DAP/reference1.153210.4
52DAP/reference1.256790.065
57DAP/reference1.098790.538

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960410.335
17DAP/reference1.02360.898
27DAP/reference1.007061
39DAP/reference0.981980.643
41DAP/reference1.462090.009
42DAP/reference1.521690.032
43DAP/reference1.432330.09
47DAP/reference1.097830.966
52DAP/reference1.780780.091
57DAP/reference0.901360.268

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.55436
26DAP/20DAP1.204720.285
34DAP/26DAP0.943230.826
51DAP/34DAP1.10370.377
52DAP/51DAP1.110760.358
53DAP/52DAP2.105190.034
55DAP/53DAP1.565370.073
57DAP/55DAP1.076430.986
62DAP/57DAP0.759660.28
68DAP/62DAP1.40420.939
68DAP/14DAP1.445380.487

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker6.328190.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.139370.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.14597
Mature Eggplant/Ripe Tomato0.051060.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.335160.877
1-1-2/M821.363931
12-2/M821.07161
12-4/M822.164871
1-3/M822.517870.255
2-1-1/M820.836640.465
2-1/M820.885970.74
2-6/M820.926341
3-2/M820.121690.455
4-1-1/M821.183751
4-1/M821.07818
4-3-2/M821.23090.508
4-3/M820.933710.72
5-3/M820.969471
6-2/M821.136271
6-3/M820.948261
7-1/M820.968981
7-2/M821.305851
9-3-2/M821.252961

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.843781
IL2-6/WTpooled0.987491
IL7-5/WTpooled0.838961
IL7-3/WTpooled0.866460.418
IL12-4/WTpooled1.08250.785
IL1-4/WTpooled1.02691
WT/WTpooled1.014571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.944020.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.914261
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.62261
DC3000/delta hrp 24h0.524210.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.045580.145
DC3000 delta B/DC3000 delta AB1.627740.212

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981481
Var 0h0.984131
Var 12h I row2-row10.928990.338
Var 12h NI row2-row11.045760.649
Var 36h I row2-row11.069461
Var 36h NI row2-row12.614851
Var 60h I row2-row10.810050.306
Var 60h NI row2-row11.105631
Time course 0hI-0hNI0.910430.411
Time course 12hI-12hNI0.991340.991
Time course 36hI-36hNI1.090360.316
Time course 60hI-60hNI0.902340.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.189580.381
Manapal/WT (red)1.400620.222