Expression of 1-1-4.4.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.094370.838
27DAP/17DAP0.833130.644
39DAP/27DAP1.10751
41DAP/39DAP1.310990.25
42DAP/41DAP1.350780.477
43DAP/42DAP1.214280.985
47DAP/43DAP1.782310.42
52DAP/47DAP0.82790.548
57DAP/52DAP1.460510.96

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.245510.052
17DAP/reference1.066321
27DAP/reference1.023920.996
39DAP/reference1.080410.359
41DAP/reference0.950430.542
42DAP/reference0.969340.315
43DAP/reference1.085430.569
47DAP/reference1.105190.167
52DAP/reference1.088770.663
57DAP/reference1.012770.736

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.166550.379
27DAP/17DAP0.953670.821
39DAP/27DAP1.067840.799
41DAP/39DAP1.008261
42DAP/41DAP1.082320.694
43DAP/42DAP1.728830.021
47DAP/43DAP1.024650.951
52DAP/47DAP1.208240.598
57DAP/52DAP1.156570.978
57DAP/7DAP1.672281

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.784320.066
17DAP/reference0.765730.035
27DAP/reference0.727160.109
39DAP/reference0.872640.198
41DAP/reference0.731580.029
42DAP/reference0.607920.01
43DAP/reference0.773870.026
47DAP/reference0.976820.671
52DAP/reference0.90570.254
57DAP/reference0.809020.015

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.763730.257
17DAP/reference0.867610.239
27DAP/reference0.924780.467
39DAP/reference1.062261
41DAP/reference1.038121
42DAP/reference1.138560.455
43DAP/reference0.928040.45
47DAP/reference1.088320.4
52DAP/reference0.955110.407
57DAP/reference1.033820.848

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.977110.607
17DAP/reference1.038750.757
27DAP/reference0.938630.442
39DAP/reference0.942580.271
41DAP/reference1.102460.554
42DAP/reference1.004771
43DAP/reference1.245360.474
47DAP/reference1.153640.461
52DAP/reference0.850550.189
57DAP/reference1.104510.614

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.990521
26DAP/20DAP1.070630.905
34DAP/26DAP0.928150.834
51DAP/34DAP0.934850.727
52DAP/51DAP1.134330.704
53DAP/52DAP0.788520.186
55DAP/53DAP1.220050.755
57DAP/55DAP1.330670.407
62DAP/57DAP1.029281
68DAP/62DAP1.00660.863
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.325960.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.449020.06
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.22754
Mature Eggplant/Ripe Tomato0.16085

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.75223
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.97807
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.15314
7-2/M82N/AN/A
9-3-2/M820.78657

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.167780.277
IL2-6/WTpooled1.07351
IL7-5/WTpooled0.9935
IL7-3/WTpooled1.195111
IL12-4/WTpooled1.241580.673
IL1-4/WTpooled0.998391
WT/WTpooled0.90741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.740370.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.822891
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.96684
DC3000/delta hrp 24h0.923430.711

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.082291
Var 0h0.545940.421
Var 12h I row2-row10.981011
Var 12h NI row2-row10.939660.906
Var 36h I row2-row11.08530.601
Var 36h NI row2-row10.762720.706
Var 60h I row2-row11.008120.562
Var 60h NI row2-row10.919630.932
Time course 0hI-0hNI1.090440.537
Time course 12hI-12hNI0.906970.247
Time course 36hI-36hNI0.904480.136
Time course 60hI-60hNI0.675910.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.912331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.289940.307
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.147730.413