Expression of 1-1-4.4.17.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09437 | 0.838 |
27DAP/17DAP | 0.83313 | 0.644 |
39DAP/27DAP | 1.1075 | 1 |
41DAP/39DAP | 1.31099 | 0.25 |
42DAP/41DAP | 1.35078 | 0.477 |
43DAP/42DAP | 1.21428 | 0.985 |
47DAP/43DAP | 1.78231 | 0.42 |
52DAP/47DAP | 0.8279 | 0.548 |
57DAP/52DAP | 1.46051 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24551 | 0.052 |
17DAP/reference | 1.06632 | 1 |
27DAP/reference | 1.02392 | 0.996 |
39DAP/reference | 1.08041 | 0.359 |
41DAP/reference | 0.95043 | 0.542 |
42DAP/reference | 0.96934 | 0.315 |
43DAP/reference | 1.08543 | 0.569 |
47DAP/reference | 1.10519 | 0.167 |
52DAP/reference | 1.08877 | 0.663 |
57DAP/reference | 1.01277 | 0.736 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16655 | 0.379 |
27DAP/17DAP | 0.95367 | 0.821 |
39DAP/27DAP | 1.06784 | 0.799 |
41DAP/39DAP | 1.00826 | 1 |
42DAP/41DAP | 1.08232 | 0.694 |
43DAP/42DAP | 1.72883 | 0.021 |
47DAP/43DAP | 1.02465 | 0.951 |
52DAP/47DAP | 1.20824 | 0.598 |
57DAP/52DAP | 1.15657 | 0.978 |
57DAP/7DAP | 1.67228 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78432 | 0.066 |
17DAP/reference | 0.76573 | 0.035 |
27DAP/reference | 0.72716 | 0.109 |
39DAP/reference | 0.87264 | 0.198 |
41DAP/reference | 0.73158 | 0.029 |
42DAP/reference | 0.60792 | 0.01 |
43DAP/reference | 0.77387 | 0.026 |
47DAP/reference | 0.97682 | 0.671 |
52DAP/reference | 0.9057 | 0.254 |
57DAP/reference | 0.80902 | 0.015 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76373 | 0.257 |
17DAP/reference | 0.86761 | 0.239 |
27DAP/reference | 0.92478 | 0.467 |
39DAP/reference | 1.06226 | 1 |
41DAP/reference | 1.03812 | 1 |
42DAP/reference | 1.13856 | 0.455 |
43DAP/reference | 0.92804 | 0.45 |
47DAP/reference | 1.08832 | 0.4 |
52DAP/reference | 0.95511 | 0.407 |
57DAP/reference | 1.03382 | 0.848 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97711 | 0.607 |
17DAP/reference | 1.03875 | 0.757 |
27DAP/reference | 0.93863 | 0.442 |
39DAP/reference | 0.94258 | 0.271 |
41DAP/reference | 1.10246 | 0.554 |
42DAP/reference | 1.00477 | 1 |
43DAP/reference | 1.24536 | 0.474 |
47DAP/reference | 1.15364 | 0.461 |
52DAP/reference | 0.85055 | 0.189 |
57DAP/reference | 1.10451 | 0.614 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99052 | 1 |
26DAP/20DAP | 1.07063 | 0.905 |
34DAP/26DAP | 0.92815 | 0.834 |
51DAP/34DAP | 0.93485 | 0.727 |
52DAP/51DAP | 1.13433 | 0.704 |
53DAP/52DAP | 0.78852 | 0.186 |
55DAP/53DAP | 1.22005 | 0.755 |
57DAP/55DAP | 1.33067 | 0.407 |
62DAP/57DAP | 1.02928 | 1 |
68DAP/62DAP | 1.0066 | 0.863 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.32596 | 0.092 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.44902 | 0.06 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.22754 | |
Mature Eggplant/Ripe Tomato | 0.16085 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.75223 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.97807 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.15314 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.78657 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.16778 | 0.277 |
IL2-6/WTpooled | 1.07351 | |
IL7-5/WTpooled | 0.9935 | |
IL7-3/WTpooled | 1.19511 | 1 |
IL12-4/WTpooled | 1.24158 | 0.673 |
IL1-4/WTpooled | 0.99839 | 1 |
WT/WTpooled | 0.9074 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.74037 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82289 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.96684 | |
DC3000/delta hrp 24h | 0.92343 | 0.711 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.08229 | 1 |
Var 0h | 0.54594 | 0.421 |
Var 12h I row2-row1 | 0.98101 | 1 |
Var 12h NI row2-row1 | 0.93966 | 0.906 |
Var 36h I row2-row1 | 1.0853 | 0.601 |
Var 36h NI row2-row1 | 0.76272 | 0.706 |
Var 60h I row2-row1 | 1.00812 | 0.562 |
Var 60h NI row2-row1 | 0.91963 | 0.932 |
Time course 0hI-0hNI | 1.09044 | 0.537 |
Time course 12hI-12hNI | 0.90697 | 0.247 |
Time course 36hI-36hNI | 0.90448 | 0.136 |
Time course 60hI-60hNI | 0.67591 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.91233 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.28994 | 0.307 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.14773 | 0.413 |
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