Expression of 1-1-4.4.17.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.5977 | 0.056 |
27DAP/17DAP | 0.7823 | 0.422 |
39DAP/27DAP | 1.45343 | 0.416 |
41DAP/39DAP | 0.86469 | 0.558 |
42DAP/41DAP | 1.69729 | 0.493 |
43DAP/42DAP | 1.01161 | 0.937 |
47DAP/43DAP | 1.09219 | 0.776 |
52DAP/47DAP | 0.72771 | 0.378 |
57DAP/52DAP | 1.25005 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78698 | 0.167 |
17DAP/reference | 0.72017 | 0.007 |
27DAP/reference | 0.85981 | 0.295 |
39DAP/reference | 0.80614 | 0.083 |
41DAP/reference | 0.70306 | 0.008 |
42DAP/reference | 0.8108 | 0.001 |
43DAP/reference | 0.88578 | 0.019 |
47DAP/reference | 0.93168 | 0.127 |
52DAP/reference | 1.0618 | 0.096 |
57DAP/reference | 1.09398 | 0.22 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.90267 | 0.054 |
27DAP/17DAP | 0.57813 | 0.1 |
39DAP/27DAP | 1.34462 | 0.19 |
41DAP/39DAP | 1.29616 | 0.043 |
42DAP/41DAP | 0.90585 | 0.503 |
43DAP/42DAP | 0.99709 | 0.774 |
47DAP/43DAP | 1.12696 | 0.471 |
52DAP/47DAP | 1.37948 | 0.209 |
57DAP/52DAP | 1.43541 | 0.065 |
57DAP/7DAP | 1.40212 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53153 | 0.043 |
17DAP/reference | 1.49411 | 0.244 |
27DAP/reference | 0.85748 | 0.135 |
39DAP/reference | 1.40275 | 0.909 |
41DAP/reference | 1.20751 | 0.723 |
42DAP/reference | 1.10006 | 0.308 |
43DAP/reference | 1.15098 | 0.788 |
47DAP/reference | 1.37406 | 0.304 |
52DAP/reference | 1.21331 | 0.212 |
57DAP/reference | 1.09955 | 0.746 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8053 | 0.038 |
17DAP/reference | 0.69738 | 0.007 |
27DAP/reference | 0.80935 | 0.044 |
39DAP/reference | 0.78702 | 0.017 |
41DAP/reference | 0.91794 | 0.173 |
42DAP/reference | 0.94536 | 0.289 |
43DAP/reference | 0.89955 | 0.25 |
47DAP/reference | 0.9339 | 0.097 |
52DAP/reference | 0.96048 | 0.239 |
57DAP/reference | 0.89071 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95535 | 0.071 |
17DAP/reference | 1.24569 | 0.62 |
27DAP/reference | 1.36104 | 0.049 |
39DAP/reference | 1.32367 | 0.13 |
41DAP/reference | 1.10018 | 0.818 |
42DAP/reference | 0.80315 | 0.134 |
43DAP/reference | 0.92507 | 0.432 |
47DAP/reference | 0.94063 | 0.348 |
52DAP/reference | 1.10381 | 0.609 |
57DAP/reference | 1.09992 | 0.428 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90327 | 0.997 |
26DAP/20DAP | 0.87268 | 1 |
34DAP/26DAP | 0.73647 | 0.455 |
51DAP/34DAP | 0.89895 | 0.624 |
52DAP/51DAP | 1.63575 | 0.05 |
53DAP/52DAP | 1.06075 | 0.901 |
55DAP/53DAP | 1.05188 | 0.848 |
57DAP/55DAP | 1.54383 | 0.274 |
62DAP/57DAP | 0.46418 | 0.002 |
68DAP/62DAP | 1.60725 | 0.029 |
68DAP/14DAP | 1.15425 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47146 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96974 | 0.692 |
Mature Green Tomato/Ripe Tomato | 0.85016 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.80983 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.03941 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.0086 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92293 | 0.944 |
1-1-2/M82 | 1.2047 | 0.977 |
12-2/M82 | 1.03399 | 1 |
12-4/M82 | 0.89486 | 1 |
1-3/M82 | 0.57551 | 0.378 |
2-1-1/M82 | 0.62278 | 0.465 |
2-1/M82 | 0.76088 | |
2-6/M82 | 0.81412 | |
3-2/M82 | 0.86187 | |
4-1-1/M82 | 0.68603 | 0.908 |
4-1/M82 | 1.90801 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.09856 | 1 |
5-3/M82 | 1.19487 | 1 |
6-2/M82 | 1.08922 | |
6-3/M82 | 1.11636 | 1 |
7-1/M82 | 0.68403 | 0.476 |
7-2/M82 | 0.87706 | 0.796 |
9-3-2/M82 | 1.60082 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02348 | 1 |
IL2-6/WTpooled | 0.85964 | 0.473 |
IL7-5/WTpooled | 1.00832 | 1 |
IL7-3/WTpooled | 0.86582 | 0.418 |
IL12-4/WTpooled | 0.90357 | 0.581 |
IL1-4/WTpooled | 1.15183 | 1 |
WT/WTpooled | 0.87087 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84479 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90862 | 1 |
DC3000/delta hrp 6h | 0.56309 | 0.489 |
DC3000/delta hrp 12h | 1.02625 | 1 |
DC3000/delta hrp 24h | 0.81805 | 0.092 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94295 | 0.629 |
DC3000 delta B/DC3000 delta AB | 1.23901 | 0.406 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.76933 | 1 |
Exp 36h | 1.14914 | 1 |
Exp 60h | 0.9153 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99552 | 1 |
Var 0h | 0.99855 | 1 |
Var 12h I row2-row1 | 1.30854 | 0.406 |
Var 12h NI row2-row1 | 1.16044 | 0.649 |
Var 36h I row2-row1 | 1.1249 | 0.601 |
Var 36h NI row2-row1 | 1.62731 | 0.482 |
Var 60h I row2-row1 | 0.78878 | 0.287 |
Var 60h NI row2-row1 | 1.12958 | 0.904 |
Time course 0hI-0hNI | 1.02664 | 1 |
Time course 12hI-12hNI | 1.04111 | 0.833 |
Time course 36hI-36hNI | 1.16423 | 0.355 |
Time course 60hI-60hNI | 0.66381 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8828 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.41252 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.73075 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02045 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.67594 | 0.083 |
Manapal/WT (break) | 0.57015 | 0.333 |
Manapal/WT (red) | 0.68207 | 0.181 |
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