Expression of 1-1-4.4.18.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.253880.709
27DAP/17DAP1.680080.45
39DAP/27DAP0.931260.641
41DAP/39DAP1.123680.902
42DAP/41DAP1.875770.29
43DAP/42DAP0.978870.91
47DAP/43DAP1.000970.68
52DAP/47DAP1.235230.545
57DAP/52DAP1.517370.817

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.886890.037
17DAP/reference1.052530.585
27DAP/reference1.001780.923
39DAP/reference1.000571
41DAP/reference1.009510.91
42DAP/reference0.957840.145
43DAP/reference0.923050.143
47DAP/reference0.934850.161
52DAP/reference0.981350.515
57DAP/reference0.849660.042

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.91040.595
27DAP/17DAP0.950920.782
39DAP/27DAP0.91337
41DAP/39DAP1.597330.727
42DAP/41DAP1.080220.8
43DAP/42DAP0.921
47DAP/43DAP1.146690.93
52DAP/47DAP0.786490.538
57DAP/52DAP1.332410.659
57DAP/7DAP1.07331

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.171090.197
17DAP/reference1.122630.574
27DAP/reference1.180930.804
39DAP/reference1.417850.024
41DAP/reference1.396990.05
42DAP/reference1.385050.076
43DAP/reference1.314880.056
47DAP/reference1.139130.632
52DAP/reference1.242740.008
57DAP/reference1.155910.775

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.928750.399
17DAP/reference1.013270.873
27DAP/reference0.929310.249
39DAP/reference1.027370.956
41DAP/reference1.037270.925
42DAP/reference0.81990.012
43DAP/reference0.993640.681
47DAP/reference0.907850.031
52DAP/reference1.138150.106
57DAP/reference1.234760.07

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.225440.265
17DAP/reference1.115610.572
27DAP/reference1.092570.749
39DAP/reference1.173940.254
41DAP/reference1.352950.188
42DAP/reference1.221190.55
43DAP/reference1.224330.7
47DAP/reference0.914440.231
52DAP/reference1.25960.306
57DAP/reference0.8080.102

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.088231
26DAP/20DAP0.71596
34DAP/26DAP1.47240.542
51DAP/34DAP0.826590.492
52DAP/51DAP1.723190.792
53DAP/52DAP1.147570.895
55DAP/53DAP1.17791
57DAP/55DAP0.990770.839
62DAP/57DAP1.231340.833
68DAP/62DAP0.783360.109
68DAP/14DAP0.747330.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.863480.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.30119
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.105180.224
Mature Eggplant/Ripe Tomato2.263411

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.92691
1-1-2/M820.96252
12-2/M821.190560.61
12-4/M821.13313
1-3/M820.51897
2-1-1/M820.864920.92
2-1/M82N/AN/A
2-6/M821.028681
3-2/M821.01403
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.71689
5-3/M821.090581
6-2/M820.93394
6-3/M82N/AN/A
7-1/M821.0137
7-2/M821.1945
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.83492
IL2-6/WTpooled0.92486
IL7-5/WTpooled0.95217
IL7-3/WTpooled0.87674
IL12-4/WTpooled0.981981
IL1-4/WTpooled0.98386
WT/WTpooled0.994581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.999731
DC3000/delta hrp 6h0.7157
DC3000/delta hrp 12h1.081161
DC3000/delta hrp 24h1.370420.088

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB3.01776

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.352620.254
Exp 36h2.834960.371
Exp 60h2.460520.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.958921
Var 12h I row2-row11.102540.795
Var 12h NI row2-row10.664780.627
Var 36h I row2-row10.807380.805
Var 36h NI row2-row10.65648
Var 60h I row2-row11.247470.562
Var 60h NI row2-row13.238390.904
Time course 0hI-0hNI1.542720.799
Time course 12hI-12hNI1.150910.684
Time course 36hI-36hNI1.591060.08
Time course 60hI-60hNI2.848910.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.004361
transgenic ySAMdc/azygous control (breaker)0.865020.49
transgenic ySAMdc/azygous control (red)1.283291

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996170.832

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.53950.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.002281
Manapal/WT (break)2.390840.183
Manapal/WT (red)0.83660.229