Expression of 1-1-4.4.18.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25388 | 0.709 |
27DAP/17DAP | 1.68008 | 0.45 |
39DAP/27DAP | 0.93126 | 0.641 |
41DAP/39DAP | 1.12368 | 0.902 |
42DAP/41DAP | 1.87577 | 0.29 |
43DAP/42DAP | 0.97887 | 0.91 |
47DAP/43DAP | 1.00097 | 0.68 |
52DAP/47DAP | 1.23523 | 0.545 |
57DAP/52DAP | 1.51737 | 0.817 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88689 | 0.037 |
17DAP/reference | 1.05253 | 0.585 |
27DAP/reference | 1.00178 | 0.923 |
39DAP/reference | 1.00057 | 1 |
41DAP/reference | 1.00951 | 0.91 |
42DAP/reference | 0.95784 | 0.145 |
43DAP/reference | 0.92305 | 0.143 |
47DAP/reference | 0.93485 | 0.161 |
52DAP/reference | 0.98135 | 0.515 |
57DAP/reference | 0.84966 | 0.042 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9104 | 0.595 |
27DAP/17DAP | 0.95092 | 0.782 |
39DAP/27DAP | 0.91337 | |
41DAP/39DAP | 1.59733 | 0.727 |
42DAP/41DAP | 1.08022 | 0.8 |
43DAP/42DAP | 0.921 | |
47DAP/43DAP | 1.14669 | 0.93 |
52DAP/47DAP | 0.78649 | 0.538 |
57DAP/52DAP | 1.33241 | 0.659 |
57DAP/7DAP | 1.0733 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17109 | 0.197 |
17DAP/reference | 1.12263 | 0.574 |
27DAP/reference | 1.18093 | 0.804 |
39DAP/reference | 1.41785 | 0.024 |
41DAP/reference | 1.39699 | 0.05 |
42DAP/reference | 1.38505 | 0.076 |
43DAP/reference | 1.31488 | 0.056 |
47DAP/reference | 1.13913 | 0.632 |
52DAP/reference | 1.24274 | 0.008 |
57DAP/reference | 1.15591 | 0.775 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92875 | 0.399 |
17DAP/reference | 1.01327 | 0.873 |
27DAP/reference | 0.92931 | 0.249 |
39DAP/reference | 1.02737 | 0.956 |
41DAP/reference | 1.03727 | 0.925 |
42DAP/reference | 0.8199 | 0.012 |
43DAP/reference | 0.99364 | 0.681 |
47DAP/reference | 0.90785 | 0.031 |
52DAP/reference | 1.13815 | 0.106 |
57DAP/reference | 1.23476 | 0.07 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22544 | 0.265 |
17DAP/reference | 1.11561 | 0.572 |
27DAP/reference | 1.09257 | 0.749 |
39DAP/reference | 1.17394 | 0.254 |
41DAP/reference | 1.35295 | 0.188 |
42DAP/reference | 1.22119 | 0.55 |
43DAP/reference | 1.22433 | 0.7 |
47DAP/reference | 0.91444 | 0.231 |
52DAP/reference | 1.2596 | 0.306 |
57DAP/reference | 0.808 | 0.102 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08823 | 1 |
26DAP/20DAP | 0.71596 | |
34DAP/26DAP | 1.4724 | 0.542 |
51DAP/34DAP | 0.82659 | 0.492 |
52DAP/51DAP | 1.72319 | 0.792 |
53DAP/52DAP | 1.14757 | 0.895 |
55DAP/53DAP | 1.1779 | 1 |
57DAP/55DAP | 0.99077 | 0.839 |
62DAP/57DAP | 1.23134 | 0.833 |
68DAP/62DAP | 0.78336 | 0.109 |
68DAP/14DAP | 0.74733 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.86348 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.30119 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.10518 | 0.224 |
Mature Eggplant/Ripe Tomato | 2.26341 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92691 | |
1-1-2/M82 | 0.96252 | |
12-2/M82 | 1.19056 | 0.61 |
12-4/M82 | 1.13313 | |
1-3/M82 | 0.51897 | |
2-1-1/M82 | 0.86492 | 0.92 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.02868 | 1 |
3-2/M82 | 1.01403 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.71689 | |
5-3/M82 | 1.09058 | 1 |
6-2/M82 | 0.93394 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.0137 | |
7-2/M82 | 1.1945 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83492 | |
IL2-6/WTpooled | 0.92486 | |
IL7-5/WTpooled | 0.95217 | |
IL7-3/WTpooled | 0.87674 | |
IL12-4/WTpooled | 0.98198 | 1 |
IL1-4/WTpooled | 0.98386 | |
WT/WTpooled | 0.99458 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99973 | 1 |
DC3000/delta hrp 6h | 0.7157 | |
DC3000/delta hrp 12h | 1.08116 | 1 |
DC3000/delta hrp 24h | 1.37042 | 0.088 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 3.01776 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.35262 | 0.254 |
Exp 36h | 2.83496 | 0.371 |
Exp 60h | 2.46052 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.95892 | 1 |
Var 12h I row2-row1 | 1.10254 | 0.795 |
Var 12h NI row2-row1 | 0.66478 | 0.627 |
Var 36h I row2-row1 | 0.80738 | 0.805 |
Var 36h NI row2-row1 | 0.65648 | |
Var 60h I row2-row1 | 1.24747 | 0.562 |
Var 60h NI row2-row1 | 3.23839 | 0.904 |
Time course 0hI-0hNI | 1.54272 | 0.799 |
Time course 12hI-12hNI | 1.15091 | 0.684 |
Time course 36hI-36hNI | 1.59106 | 0.08 |
Time course 60hI-60hNI | 2.84891 | 0.029 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00436 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.86502 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.28329 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99617 | 0.832 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.5395 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.00228 | 1 |
Manapal/WT (break) | 2.39084 | 0.183 |
Manapal/WT (red) | 0.8366 | 0.229 |
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