Expression of 1-1-4.4.19.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.114390.77
27DAP/17DAP1.318620.809
39DAP/27DAP1.120270.841
41DAP/39DAP1.20110.63
42DAP/41DAP1.102840.941
43DAP/42DAP1.074591
47DAP/43DAP1.237730.746
52DAP/47DAP0.893830.637
57DAP/52DAP1.041230.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.203270.04
17DAP/reference1.427530.018
27DAP/reference1.294740.132
39DAP/reference1.327170.214
41DAP/reference1.736370.013
42DAP/reference1.272830.001
43DAP/reference1.105850.382
47DAP/reference1.179930.006
52DAP/reference1.088090.354
57DAP/reference1.035520.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.961750.644
27DAP/17DAP0.998470.969
39DAP/27DAP1.025360.728
41DAP/39DAP0.948280.512
42DAP/41DAP1.043160.687
43DAP/42DAP0.990550.875
47DAP/43DAP0.96720.764
52DAP/47DAP1.105740.598
57DAP/52DAP0.992060.841
57DAP/7DAP0.926181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.075180.927
17DAP/reference0.90360.22
27DAP/reference0.764870.066
39DAP/reference1.060210.64
41DAP/reference0.970360.449
42DAP/reference1.334130.059
43DAP/reference1.065140.788
47DAP/reference1.017560.98
52DAP/reference1.288370.328
57DAP/reference1.419960.046

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.372730.404
17DAP/reference1.745870.01
27DAP/reference1.342030.076
39DAP/reference1.222270.124
41DAP/reference1.286730.057
42DAP/reference1.369530.02
43DAP/reference1.623120.101
47DAP/reference1.350770.008
52DAP/reference1.429880.008
57DAP/reference1.449250.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.128190.676
17DAP/reference1.175030.558
27DAP/reference0.896880.465
39DAP/reference1.033890.885
41DAP/reference0.870320.512
42DAP/reference0.894840.445
43DAP/reference1.127740.531
47DAP/reference1.201070.324
52DAP/reference1.418810.09
57DAP/reference0.708780.04

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.961581
26DAP/20DAP0.916720.512
34DAP/26DAP1.095970.304
51DAP/34DAP1.066380.535
52DAP/51DAP1.11140.213
53DAP/52DAP0.965090.79
55DAP/53DAP0.891710.619
57DAP/55DAP1.279920.87
62DAP/57DAP1.07661
68DAP/62DAP0.956530.769
68DAP/14DAP0.733530.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.760980.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.880660.317
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.31824
Mature Eggplant/Ripe Tomato1.04354

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.985670.961
1-1-2/M820.983210.958
12-2/M820.946580.955
12-4/M821.093281
1-3/M820.994181
2-1-1/M820.963560.683
2-1/M821.57315
2-6/M820.996331
3-2/M821.000051
4-1-1/M821.041971
4-1/M821.176891
4-3-2/M820.913291
4-3/M820.905260.72
5-3/M821.025911
6-2/M821.051141
6-3/M820.964751
7-1/M821.03471
7-2/M820.949220.881
9-3-2/M820.986420.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.699980.321
IL2-6/WTpooled1.192770.584
IL7-5/WTpooled1.15431
IL7-3/WTpooled0.982291
IL12-4/WTpooled0.8560.71
IL1-4/WTpooled0.685360.476
WT/WTpooled1.101991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.113010.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02250.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.483131
DC3000/delta hrp 24h1.149570.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.377210.333
DC3000 delta B/DC3000 delta AB1.137940.386

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993011
Var 0h0.323791
Var 12h I row2-row10.992191
Var 12h NI row2-row10.967170.627
Var 36h I row2-row11.053741
Var 36h NI row2-row10.992590.852
Var 60h I row2-row11.073491
Var 60h NI row2-row11.095370.904
Time course 0hI-0hNI0.982260.94
Time course 12hI-12hNI0.994481
Time course 36hI-36hNI0.963050.411
Time course 60hI-60hNI0.858310.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.053340.862
transgenic ySAMdc/azygous control (breaker)1.560811
transgenic ySAMdc/azygous control (red)1.003091

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.914130.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.297830.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.148461
Manapal/WT (red)1.731080.133