Expression of 1-1-4.4.19.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11439 | 0.77 |
27DAP/17DAP | 1.31862 | 0.809 |
39DAP/27DAP | 1.12027 | 0.841 |
41DAP/39DAP | 1.2011 | 0.63 |
42DAP/41DAP | 1.10284 | 0.941 |
43DAP/42DAP | 1.07459 | 1 |
47DAP/43DAP | 1.23773 | 0.746 |
52DAP/47DAP | 0.89383 | 0.637 |
57DAP/52DAP | 1.04123 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20327 | 0.04 |
17DAP/reference | 1.42753 | 0.018 |
27DAP/reference | 1.29474 | 0.132 |
39DAP/reference | 1.32717 | 0.214 |
41DAP/reference | 1.73637 | 0.013 |
42DAP/reference | 1.27283 | 0.001 |
43DAP/reference | 1.10585 | 0.382 |
47DAP/reference | 1.17993 | 0.006 |
52DAP/reference | 1.08809 | 0.354 |
57DAP/reference | 1.03552 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96175 | 0.644 |
27DAP/17DAP | 0.99847 | 0.969 |
39DAP/27DAP | 1.02536 | 0.728 |
41DAP/39DAP | 0.94828 | 0.512 |
42DAP/41DAP | 1.04316 | 0.687 |
43DAP/42DAP | 0.99055 | 0.875 |
47DAP/43DAP | 0.9672 | 0.764 |
52DAP/47DAP | 1.10574 | 0.598 |
57DAP/52DAP | 0.99206 | 0.841 |
57DAP/7DAP | 0.92618 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07518 | 0.927 |
17DAP/reference | 0.9036 | 0.22 |
27DAP/reference | 0.76487 | 0.066 |
39DAP/reference | 1.06021 | 0.64 |
41DAP/reference | 0.97036 | 0.449 |
42DAP/reference | 1.33413 | 0.059 |
43DAP/reference | 1.06514 | 0.788 |
47DAP/reference | 1.01756 | 0.98 |
52DAP/reference | 1.28837 | 0.328 |
57DAP/reference | 1.41996 | 0.046 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37273 | 0.404 |
17DAP/reference | 1.74587 | 0.01 |
27DAP/reference | 1.34203 | 0.076 |
39DAP/reference | 1.22227 | 0.124 |
41DAP/reference | 1.28673 | 0.057 |
42DAP/reference | 1.36953 | 0.02 |
43DAP/reference | 1.62312 | 0.101 |
47DAP/reference | 1.35077 | 0.008 |
52DAP/reference | 1.42988 | 0.008 |
57DAP/reference | 1.44925 | 0.094 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12819 | 0.676 |
17DAP/reference | 1.17503 | 0.558 |
27DAP/reference | 0.89688 | 0.465 |
39DAP/reference | 1.03389 | 0.885 |
41DAP/reference | 0.87032 | 0.512 |
42DAP/reference | 0.89484 | 0.445 |
43DAP/reference | 1.12774 | 0.531 |
47DAP/reference | 1.20107 | 0.324 |
52DAP/reference | 1.41881 | 0.09 |
57DAP/reference | 0.70878 | 0.04 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96158 | 1 |
26DAP/20DAP | 0.91672 | 0.512 |
34DAP/26DAP | 1.09597 | 0.304 |
51DAP/34DAP | 1.06638 | 0.535 |
52DAP/51DAP | 1.1114 | 0.213 |
53DAP/52DAP | 0.96509 | 0.79 |
55DAP/53DAP | 0.89171 | 0.619 |
57DAP/55DAP | 1.27992 | 0.87 |
62DAP/57DAP | 1.0766 | 1 |
68DAP/62DAP | 0.95653 | 0.769 |
68DAP/14DAP | 0.73353 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76098 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.88066 | 0.317 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.31824 | |
Mature Eggplant/Ripe Tomato | 1.04354 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98567 | 0.961 |
1-1-2/M82 | 0.98321 | 0.958 |
12-2/M82 | 0.94658 | 0.955 |
12-4/M82 | 1.09328 | 1 |
1-3/M82 | 0.99418 | 1 |
2-1-1/M82 | 0.96356 | 0.683 |
2-1/M82 | 1.57315 | |
2-6/M82 | 0.99633 | 1 |
3-2/M82 | 1.00005 | 1 |
4-1-1/M82 | 1.04197 | 1 |
4-1/M82 | 1.17689 | 1 |
4-3-2/M82 | 0.91329 | 1 |
4-3/M82 | 0.90526 | 0.72 |
5-3/M82 | 1.02591 | 1 |
6-2/M82 | 1.05114 | 1 |
6-3/M82 | 0.96475 | 1 |
7-1/M82 | 1.0347 | 1 |
7-2/M82 | 0.94922 | 0.881 |
9-3-2/M82 | 0.98642 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.69998 | 0.321 |
IL2-6/WTpooled | 1.19277 | 0.584 |
IL7-5/WTpooled | 1.1543 | 1 |
IL7-3/WTpooled | 0.98229 | 1 |
IL12-4/WTpooled | 0.856 | 0.71 |
IL1-4/WTpooled | 0.68536 | 0.476 |
WT/WTpooled | 1.10199 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11301 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0225 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.48313 | 1 |
DC3000/delta hrp 24h | 1.14957 | 0.336 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.37721 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.13794 | 0.386 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99301 | 1 |
Var 0h | 0.32379 | 1 |
Var 12h I row2-row1 | 0.99219 | 1 |
Var 12h NI row2-row1 | 0.96717 | 0.627 |
Var 36h I row2-row1 | 1.05374 | 1 |
Var 36h NI row2-row1 | 0.99259 | 0.852 |
Var 60h I row2-row1 | 1.07349 | 1 |
Var 60h NI row2-row1 | 1.09537 | 0.904 |
Time course 0hI-0hNI | 0.98226 | 0.94 |
Time course 12hI-12hNI | 0.99448 | 1 |
Time course 36hI-36hNI | 0.96305 | 0.411 |
Time course 60hI-60hNI | 0.85831 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05334 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.56081 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00309 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91413 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.29783 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.14846 | 1 |
Manapal/WT (red) | 1.73108 | 0.133 |
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