Expression of 1-1-4.4.2.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91725 | 0.511 |
27DAP/17DAP | 0.86953 | 0.67 |
39DAP/27DAP | 0.83992 | 0.397 |
41DAP/39DAP | 1.282 | 0.285 |
42DAP/41DAP | 1.15514 | 0.912 |
43DAP/42DAP | 0.88756 | 0.765 |
47DAP/43DAP | 1.0023 | 0.949 |
52DAP/47DAP | 1.36501 | 0.502 |
57DAP/52DAP | 0.81041 | 0.591 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00831 | 1 |
17DAP/reference | 1.02015 | 0.74 |
27DAP/reference | 1.12363 | 0.077 |
39DAP/reference | 1.10486 | 0.153 |
41DAP/reference | 1.03795 | 0.48 |
42DAP/reference | 1.05124 | 0.103 |
43DAP/reference | 1.25412 | 0.008 |
47DAP/reference | 1.16154 | 0.027 |
52DAP/reference | 1.15058 | 0.069 |
57DAP/reference | 1.18064 | 0.109 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09535 | 0.398 |
27DAP/17DAP | 0.95515 | 0.748 |
39DAP/27DAP | 1.01963 | 0.707 |
41DAP/39DAP | 0.98414 | 0.98 |
42DAP/41DAP | 1.01137 | 1 |
43DAP/42DAP | 1.04338 | 0.351 |
47DAP/43DAP | 1.03997 | 0.833 |
52DAP/47DAP | 0.98571 | 0.925 |
57DAP/52DAP | 0.9584 | 0.507 |
57DAP/7DAP | 0.94383 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.848 | 0.088 |
17DAP/reference | 0.88183 | 0.014 |
27DAP/reference | 0.89428 | 0.019 |
39DAP/reference | 0.79946 | 0.011 |
41DAP/reference | 0.79796 | 0.047 |
42DAP/reference | 0.76545 | 0.011 |
43DAP/reference | 0.77944 | 0.011 |
47DAP/reference | 1.14825 | 0.717 |
52DAP/reference | 0.71581 | 0.03 |
57DAP/reference | 0.71304 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90705 | 0.17 |
17DAP/reference | 1.03354 | 0.739 |
27DAP/reference | 1.18183 | 0.078 |
39DAP/reference | 1.26525 | 0.023 |
41DAP/reference | 1.12978 | 0.255 |
42DAP/reference | 1.07044 | 0.342 |
43DAP/reference | 1.10987 | 0.457 |
47DAP/reference | 1.04754 | 0.377 |
52DAP/reference | 1.11089 | 0.019 |
57DAP/reference | 0.91326 | 0.085 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90059 | 0.068 |
17DAP/reference | 0.9467 | 0.444 |
27DAP/reference | 0.83916 | 0.062 |
39DAP/reference | 0.83819 | 0.063 |
41DAP/reference | 0.92022 | 0.264 |
42DAP/reference | 1.0507 | 0.802 |
43DAP/reference | 0.96763 | 0.503 |
47DAP/reference | 1.32766 | 0.14 |
52DAP/reference | 1.047 | 0.876 |
57DAP/reference | 1.85386 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03781 | 1 |
26DAP/20DAP | 0.87778 | 0.512 |
34DAP/26DAP | 1.10655 | 1 |
51DAP/34DAP | 1.0485 | 0.692 |
52DAP/51DAP | 0.89442 | 1 |
53DAP/52DAP | 1.03937 | 0.868 |
55DAP/53DAP | 1.0542 | 0.693 |
57DAP/55DAP | 1.05225 | 0.682 |
62DAP/57DAP | 0.91936 | 0.466 |
68DAP/62DAP | 1.04608 | 0.919 |
68DAP/14DAP | 0.92774 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79993 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73375 | 0.199 |
Mature Green Tomato/Ripe Tomato | 1.17905 | 0.399 |
Immature Eggplant/Mature Eggplant | 0.80341 | 0.117 |
Ripe Pepper/Ripe Tomato | 1.76469 | 1 |
Mature Eggplant/Ripe Tomato | 1.45006 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03207 | 0.742 |
1-1-2/M82 | 1.00198 | 1 |
12-2/M82 | 1.12076 | 0.61 |
12-4/M82 | 1.02847 | |
1-3/M82 | 0.87834 | 0.378 |
2-1-1/M82 | 1.2327 | 0.457 |
2-1/M82 | 0.41841 | |
2-6/M82 | 1.06229 | 0.505 |
3-2/M82 | 1.05638 | |
4-1-1/M82 | 1.10625 | 1 |
4-1/M82 | 1.16235 | 0.853 |
4-3-2/M82 | 0.8037 | 0.487 |
4-3/M82 | 1.04331 | 1 |
5-3/M82 | 1.04721 | 1 |
6-2/M82 | 1.11857 | 1 |
6-3/M82 | 0.9925 | 1 |
7-1/M82 | 0.89056 | |
7-2/M82 | 1.116 | 1 |
9-3-2/M82 | 1.16022 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.6602 | |
IL2-6/WTpooled | 0.98769 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 7.92973 | 0.125 |
IL12-4/WTpooled | 1.84762 | 0.516 |
IL1-4/WTpooled | 3.04961 | |
WT/WTpooled | 0.84281 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91728 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0095 | 1 |
DC3000/delta hrp 6h | 1.05349 | 1 |
DC3000/delta hrp 12h | 0.96318 | |
DC3000/delta hrp 24h | 0.82596 | 0.121 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.85113 | 0.028 |
DC3000 delta B/DC3000 delta AB | 0.77415 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98081 | 1 |
Exp 36h | 0.76712 | 0.374 |
Exp 60h | 0.82727 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96796 | 1 |
Var 0h | 0.98346 | 1 |
Var 12h I row2-row1 | 0.82337 | 0.418 |
Var 12h NI row2-row1 | 1.01462 | 1 |
Var 36h I row2-row1 | 0.90252 | 1 |
Var 36h NI row2-row1 | 1.08118 | 1 |
Var 60h I row2-row1 | 1.14431 | 1 |
Var 60h NI row2-row1 | 1.10647 | 0.904 |
Time course 0hI-0hNI | 0.94696 | 0.687 |
Time course 12hI-12hNI | 1.02065 | 0.849 |
Time course 36hI-36hNI | 0.97542 | 0.494 |
Time course 60hI-60hNI | 0.36975 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07681 | 0.372 |
transgenic ySAMdc/azygous control (breaker) | 0.85788 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.99209 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.22201 | 0.046 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85159 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.31301 | 0.105 |
Manapal/WT (break) | 1.24285 | 0.183 |
Manapal/WT (red) | 1.32018 | 0.413 |
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