Expression of 1-1-4.4.2.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.917250.511
27DAP/17DAP0.869530.67
39DAP/27DAP0.839920.397
41DAP/39DAP1.2820.285
42DAP/41DAP1.155140.912
43DAP/42DAP0.887560.765
47DAP/43DAP1.00230.949
52DAP/47DAP1.365010.502
57DAP/52DAP0.810410.591

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008311
17DAP/reference1.020150.74
27DAP/reference1.123630.077
39DAP/reference1.104860.153
41DAP/reference1.037950.48
42DAP/reference1.051240.103
43DAP/reference1.254120.008
47DAP/reference1.161540.027
52DAP/reference1.150580.069
57DAP/reference1.180640.109

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.095350.398
27DAP/17DAP0.955150.748
39DAP/27DAP1.019630.707
41DAP/39DAP0.984140.98
42DAP/41DAP1.011371
43DAP/42DAP1.043380.351
47DAP/43DAP1.039970.833
52DAP/47DAP0.985710.925
57DAP/52DAP0.95840.507
57DAP/7DAP0.94383

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.8480.088
17DAP/reference0.881830.014
27DAP/reference0.894280.019
39DAP/reference0.799460.011
41DAP/reference0.797960.047
42DAP/reference0.765450.011
43DAP/reference0.779440.011
47DAP/reference1.148250.717
52DAP/reference0.715810.03
57DAP/reference0.713040.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.907050.17
17DAP/reference1.033540.739
27DAP/reference1.181830.078
39DAP/reference1.265250.023
41DAP/reference1.129780.255
42DAP/reference1.070440.342
43DAP/reference1.109870.457
47DAP/reference1.047540.377
52DAP/reference1.110890.019
57DAP/reference0.913260.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.900590.068
17DAP/reference0.94670.444
27DAP/reference0.839160.062
39DAP/reference0.838190.063
41DAP/reference0.920220.264
42DAP/reference1.05070.802
43DAP/reference0.967630.503
47DAP/reference1.327660.14
52DAP/reference1.0470.876
57DAP/reference1.853860.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.037811
26DAP/20DAP0.877780.512
34DAP/26DAP1.106551
51DAP/34DAP1.04850.692
52DAP/51DAP0.894421
53DAP/52DAP1.039370.868
55DAP/53DAP1.05420.693
57DAP/55DAP1.052250.682
62DAP/57DAP0.919360.466
68DAP/62DAP1.046080.919
68DAP/14DAP0.927741

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.799930.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.733750.199
Mature Green Tomato/Ripe Tomato1.179050.399
Immature Eggplant/Mature Eggplant0.803410.117
Ripe Pepper/Ripe Tomato1.764691
Mature Eggplant/Ripe Tomato1.450061

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.032070.742
1-1-2/M821.001981
12-2/M821.120760.61
12-4/M821.02847
1-3/M820.878340.378
2-1-1/M821.23270.457
2-1/M820.41841
2-6/M821.062290.505
3-2/M821.05638
4-1-1/M821.106251
4-1/M821.162350.853
4-3-2/M820.80370.487
4-3/M821.043311
5-3/M821.047211
6-2/M821.118571
6-3/M820.99251
7-1/M820.89056
7-2/M821.1161
9-3-2/M821.160221

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.6602
IL2-6/WTpooled0.987691
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled7.929730.125
IL12-4/WTpooled1.847620.516
IL1-4/WTpooled3.04961
WT/WTpooled0.842811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.917280.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.00951
DC3000/delta hrp 6h1.053491
DC3000/delta hrp 12h0.96318
DC3000/delta hrp 24h0.825960.121

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.851130.028
DC3000 delta B/DC3000 delta AB0.774150.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.980811
Exp 36h0.767120.374
Exp 60h0.827270.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967961
Var 0h0.983461
Var 12h I row2-row10.823370.418
Var 12h NI row2-row11.014621
Var 36h I row2-row10.902521
Var 36h NI row2-row11.081181
Var 60h I row2-row11.144311
Var 60h NI row2-row11.106470.904
Time course 0hI-0hNI0.946960.687
Time course 12hI-12hNI1.020650.849
Time course 36hI-36hNI0.975420.494
Time course 60hI-60hNI0.369750.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.076810.372
transgenic ySAMdc/azygous control (breaker)0.857880.251
transgenic ySAMdc/azygous control (red)0.992091

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.222010.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.851590.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.313010.105
Manapal/WT (break)1.242850.183
Manapal/WT (red)1.320180.413