Expression of 1-1-4.4.2.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976580.779
27DAP/17DAP0.784310.406
39DAP/27DAP1.124910.816
41DAP/39DAP0.891420.552
42DAP/41DAP0.90631
43DAP/42DAP0.974750.918
47DAP/43DAP0.781880.36
52DAP/47DAP0.87040.633
57DAP/52DAP1.055411

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.207650.045
17DAP/reference1.134590.185
27DAP/reference1.092610.357
39DAP/reference1.02560.871
41DAP/reference0.997621
42DAP/reference1.127650.299
43DAP/reference1.125530.05
47DAP/reference1.068650.419
52DAP/reference0.852950.033
57DAP/reference0.925540.096

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.074871
27DAP/17DAP1.055450.969
39DAP/27DAP1.208610.672
41DAP/39DAP1.20950.336
42DAP/41DAP0.976280.774
43DAP/42DAP1.126460.273
47DAP/43DAP1.093710.93
52DAP/47DAP0.94210.807
57DAP/52DAP0.676810.183
57DAP/7DAP1.15842

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.042240.025
17DAP/reference1.417590.014
27DAP/reference1.103390.371
39DAP/reference1.450920.007
41DAP/reference1.356640.019
42DAP/reference1.20.059
43DAP/reference1.272820.017
47DAP/reference1.401740.021
52DAP/reference1.399140.019
57DAP/reference1.237210.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.125780.495
17DAP/reference1.196090.01
27DAP/reference1.357340.028
39DAP/reference1.419550.015
41DAP/reference1.290990.058
42DAP/reference1.330420.068
43DAP/reference1.095111
47DAP/reference1.269220.017
52DAP/reference1.119340.079
57DAP/reference1.071670.398

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.654060.016
17DAP/reference1.26530.217
27DAP/reference1.060820.644
39DAP/reference1.381780.015
41DAP/reference1.164360.04
42DAP/reference1.117750.391
43DAP/reference1.417710.017
47DAP/reference1.190370.073
52DAP/reference1.172330.473
57DAP/reference1.279370.132

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.076310.966
26DAP/20DAPN/AN/A
34DAP/26DAP0.6267
51DAP/34DAP0.93020.779
52DAP/51DAP2.597980.033
53DAP/52DAP0.764070.527
55DAP/53DAP1.855960.927
57DAP/55DAP1.092470.969
62DAP/57DAP1.006991
68DAP/62DAP1.08640.589
68DAP/14DAP0.901321

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.741090.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.17740.089
Mature Green Tomato/Ripe Tomato1.796810.017
Immature Eggplant/Mature Eggplant0.985271
Ripe Pepper/Ripe Tomato1.352671
Mature Eggplant/Ripe Tomato1.615350.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.048211
1-1-2/M820.970111
12-2/M820.924380.862
12-4/M820.913760.358
1-3/M821.285220.277
2-1-1/M821.146250.764
2-1/M820.691370.345
2-6/M821.283360.405
3-2/M821.123360.426
4-1-1/M821.079931
4-1/M820.91351
4-3-2/M821.555410.262
4-3/M821.261011
5-3/M821.177251
6-2/M821.13891
6-3/M820.9941
7-1/M821.105041
7-2/M821.320390.385
9-3-2/M821.224021

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.813340.321
IL2-6/WTpooled0.953291
IL7-5/WTpooled1.442110.792
IL7-3/WTpooled1.158250.362
IL12-4/WTpooled1.027250.673
IL1-4/WTpooled1.021791
WT/WTpooled1.000271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.971681
DC3000/delta hrp 6h1.08261
DC3000/delta hrp 12h1.20671
DC3000/delta hrp 24h0.850210.174

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.413321
Exp 36h0.863230.749
Exp 60h0.838250.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.90260.314
transgenic ySAMdc/azygous control (breaker)0.943380.49
transgenic ySAMdc/azygous control (red)1.158550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.035830.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.032641

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.231280.105
Manapal/WT (break)1.066921
Manapal/WT (red)0.938330.274