Expression of 1-1-4.4.2.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.164821
27DAP/17DAP0.798180.609
39DAP/27DAP0.883520.733
41DAP/39DAP1.701720.3
42DAP/41DAP1.266520.685
43DAP/42DAP0.928330.898
47DAP/43DAP0.933470.54
52DAP/47DAP1.289220.773
57DAP/52DAP1.027650.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.150750.334
17DAP/reference1.470860.011
27DAP/reference1.264970.03
39DAP/reference1.309750.119
41DAP/reference1.631790.014
42DAP/reference1.487650.002
43DAP/reference1.25656
47DAP/reference1.47010.602
52DAP/reference0.932730.461
57DAP/reference1.03440.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.046540.847
27DAP/17DAP0.699330.047
39DAP/27DAP0.894760.682
41DAP/39DAP1.127020.868
42DAP/41DAP0.824830.412
43DAP/42DAP1.120790.746
47DAP/43DAP2.903740.007
52DAP/47DAP0.889690.814
57DAP/52DAP1.309160.703
57DAP/7DAP0.587951

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.7325
17DAP/referenceN/AN/A
27DAP/reference0.49104
39DAP/referenceN/AN/A
41DAP/reference1.788770.416
42DAP/reference1.44915
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.761230.083
17DAP/reference1.229880.824
27DAP/reference1.133840.769
39DAP/reference1.149940.213
41DAP/reference0.815440.373
42DAP/reference1.438470.008
43DAP/reference1.535890.055
47DAP/reference1.145150.081
52DAP/reference1.285810.007
57DAP/reference1.381790.017

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/reference1.141330.246
43DAP/reference0.755660.449
47DAP/reference1.52314
52DAP/reference0.39207
57DAP/reference1.004280.704

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.161791
26DAP/20DAP1.01131
34DAP/26DAP1.053871
51DAP/34DAP2.478730.303
52DAP/51DAP2.69345
53DAP/52DAP1.629810.868
55DAP/53DAP1.249050.341
57DAP/55DAP1.50024
62DAP/57DAP0.996921
68DAP/62DAP1.45237
68DAP/14DAP0.91101

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.11385

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.838811
IL2-6/WTpooled1.126090.531
IL7-5/WTpooled1.286660.792
IL7-3/WTpooled0.893330.418
IL12-4/WTpooled1.027970.538
IL1-4/WTpooled0.93680.834
WT/WTpooled1.006081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999010.911

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.093981

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.161791
Manapal/WT (red)0.752230.607