Expression of 1-1-4.4.20.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.783860.357
27DAP/17DAP1.726640.845
39DAP/27DAP1.441440.437
41DAP/39DAP1.770420.758
42DAP/41DAP1.098041
43DAP/42DAP0.963770.925
47DAP/43DAP1.419470.793
52DAP/47DAP1.268540.922
57DAP/52DAP1.180060.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.477940.014
17DAP/reference1.715060.012
27DAP/reference1.41050.01
39DAP/reference1.626650.029
41DAP/reference1.734310.05
42DAP/reference1.113360.398
43DAP/referenceN/AN/A
47DAP/reference1.000091
52DAP/reference0.468720.086
57DAP/reference1.21881

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP1.175050.712
39DAP/27DAP2.22839
41DAP/39DAP4.55735
42DAP/41DAP2.589680.241
43DAP/42DAPN/AN/A
47DAP/43DAP1.270210.857
52DAP/47DAP1.01530.93
57DAP/52DAP1.09328
57DAP/7DAP0.98072

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.89214
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/reference2.135150.006
43DAP/reference0.40957
47DAP/reference1.539170.014
52DAP/reference2.82085
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.874930.231
17DAP/reference0.93744
27DAP/referenceN/AN/A
39DAP/reference0.960780.603
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/reference0.861840.478
47DAP/reference1.200430.015
52DAP/reference1.23529
57DAP/reference1.01138

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.23475
17DAP/reference1.66124
27DAP/referenceN/AN/A
39DAP/reference0.76472
41DAP/reference2.05238
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/reference1.284710.73
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.012311
26DAP/20DAP0.57894
34DAP/26DAP1.18029
51DAP/34DAP0.812510.598
52DAP/51DAPN/AN/A
53DAP/52DAP1.717180.166
55DAP/53DAP1.351970.733
57DAP/55DAP1.42167
62DAP/57DAP1.381030.003
68DAP/62DAP1.113270.737
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.245790.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.994741
IL2-6/WTpooled0.893171
IL7-5/WTpooled0.91221
IL7-3/WTpooled0.6402
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.76280.699
WT/WTpooled1.006791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.607590.183
Manapal/WT (red)N/AN/A