Expression of 1-1-4.4.20.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.833180.486
27DAP/17DAP1.388620.828
39DAP/27DAP1.193740.643
41DAP/39DAP0.978380.89
42DAP/41DAP1.157970.913
43DAP/42DAP1.995020.835
47DAP/43DAP1.955030.278
52DAP/47DAP2.306930.608
57DAP/52DAP1.327590.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.763430.025
17DAP/reference0.912750.104
27DAP/reference0.948130.406
39DAP/reference0.925730.17
41DAP/reference0.845340.008
42DAP/reference0.77140.001
43DAP/reference0.914950.163
47DAP/reference0.887940.032
52DAP/reference0.969970.393
57DAP/reference1.023470.762

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.150550.138
27DAP/17DAP0.929520.782
39DAP/27DAP1.307040.147
41DAP/39DAP1.033921
42DAP/41DAP1.08870.861
43DAP/42DAP1.040540.746
47DAP/43DAP1.054160.939
52DAP/47DAP1.007330.975
57DAP/52DAP1.016970.897
57DAP/7DAP0.999511

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.259860.071
17DAP/reference1.357990.012
27DAP/reference1.268960.06
39DAP/reference1.589350.016
41DAP/reference1.629080.023
42DAP/reference1.436990.046
43DAP/reference1.458310.008
47DAP/reference1.200710.187
52DAP/reference1.035311
57DAP/reference1.215030.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.764330.038
17DAP/reference0.662150.005
27DAP/reference0.756410.01
39DAP/reference0.827620.022
41DAP/reference0.91510.205
42DAP/reference0.750560.021
43DAP/reference0.728840.044
47DAP/reference0.810190.011
52DAP/reference0.865030.037
57DAP/reference0.740280.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.203970.028
17DAP/reference1.106740.728
27DAP/reference1.524620.03
39DAP/reference1.284990.016
41DAP/reference1.291230.108
42DAP/reference1.288770.204
43DAP/reference1.085290.744
47DAP/reference0.973130.494
52DAP/reference1.602810.148
57DAP/reference1.055740.8

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.122560.966
26DAP/20DAP1.106120.604
34DAP/26DAP1.023471
51DAP/34DAP0.740460.305
52DAP/51DAP0.964871
53DAP/52DAP0.946360.862
55DAP/53DAP1.238330.181
57DAP/55DAP1.117960.975
62DAP/57DAP1.265930.133
68DAP/62DAP1.060510.897
68DAP/14DAP1.320160.2

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.765150.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.92068
Ripe Pepper/Ripe Tomato0.77276
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.77954
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.449750.243
IL2-6/WTpooled0.620650.348
IL7-5/WTpooled0.644161
IL7-3/WTpooled0.772850.418
IL12-4/WTpooled0.721560.566
IL1-4/WTpooled0.608410.415
WT/WTpooled1.092321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.911610.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.01261
DC3000/delta hrp 6h1.298770.95
DC3000/delta hrp 12h1.222181
DC3000/delta hrp 24h1.04722

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.516090.409
Exp 60h1.27151

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.920441
Var 0hN/AN/A
Var 12h I row2-row10.986811
Var 12h NI row2-row10.994551
Var 36h I row2-row10.963851
Var 36h NI row2-row11.17749
Var 60h I row2-row10.957020.952
Var 60h NI row2-row10.698760.904
Time course 0hI-0hNI0.961650.801
Time course 12hI-12hNI0.907660.65
Time course 36hI-36hNI0.847220.19
Time course 60hI-60hNI1.124910.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.227170.243
transgenic ySAMdc/azygous control (breaker)0.849460.15
transgenic ySAMdc/azygous control (red)0.822591

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.046990.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.043621

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.659121
Manapal/WT (break)1.031281
Manapal/WT (red)1.050211