Expression of 1-1-4.4.20.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83318 | 0.486 |
27DAP/17DAP | 1.38862 | 0.828 |
39DAP/27DAP | 1.19374 | 0.643 |
41DAP/39DAP | 0.97838 | 0.89 |
42DAP/41DAP | 1.15797 | 0.913 |
43DAP/42DAP | 1.99502 | 0.835 |
47DAP/43DAP | 1.95503 | 0.278 |
52DAP/47DAP | 2.30693 | 0.608 |
57DAP/52DAP | 1.32759 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76343 | 0.025 |
17DAP/reference | 0.91275 | 0.104 |
27DAP/reference | 0.94813 | 0.406 |
39DAP/reference | 0.92573 | 0.17 |
41DAP/reference | 0.84534 | 0.008 |
42DAP/reference | 0.7714 | 0.001 |
43DAP/reference | 0.91495 | 0.163 |
47DAP/reference | 0.88794 | 0.032 |
52DAP/reference | 0.96997 | 0.393 |
57DAP/reference | 1.02347 | 0.762 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15055 | 0.138 |
27DAP/17DAP | 0.92952 | 0.782 |
39DAP/27DAP | 1.30704 | 0.147 |
41DAP/39DAP | 1.03392 | 1 |
42DAP/41DAP | 1.0887 | 0.861 |
43DAP/42DAP | 1.04054 | 0.746 |
47DAP/43DAP | 1.05416 | 0.939 |
52DAP/47DAP | 1.00733 | 0.975 |
57DAP/52DAP | 1.01697 | 0.897 |
57DAP/7DAP | 0.99951 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25986 | 0.071 |
17DAP/reference | 1.35799 | 0.012 |
27DAP/reference | 1.26896 | 0.06 |
39DAP/reference | 1.58935 | 0.016 |
41DAP/reference | 1.62908 | 0.023 |
42DAP/reference | 1.43699 | 0.046 |
43DAP/reference | 1.45831 | 0.008 |
47DAP/reference | 1.20071 | 0.187 |
52DAP/reference | 1.03531 | 1 |
57DAP/reference | 1.21503 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76433 | 0.038 |
17DAP/reference | 0.66215 | 0.005 |
27DAP/reference | 0.75641 | 0.01 |
39DAP/reference | 0.82762 | 0.022 |
41DAP/reference | 0.9151 | 0.205 |
42DAP/reference | 0.75056 | 0.021 |
43DAP/reference | 0.72884 | 0.044 |
47DAP/reference | 0.81019 | 0.011 |
52DAP/reference | 0.86503 | 0.037 |
57DAP/reference | 0.74028 | 0.005 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20397 | 0.028 |
17DAP/reference | 1.10674 | 0.728 |
27DAP/reference | 1.52462 | 0.03 |
39DAP/reference | 1.28499 | 0.016 |
41DAP/reference | 1.29123 | 0.108 |
42DAP/reference | 1.28877 | 0.204 |
43DAP/reference | 1.08529 | 0.744 |
47DAP/reference | 0.97313 | 0.494 |
52DAP/reference | 1.60281 | 0.148 |
57DAP/reference | 1.05574 | 0.8 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12256 | 0.966 |
26DAP/20DAP | 1.10612 | 0.604 |
34DAP/26DAP | 1.02347 | 1 |
51DAP/34DAP | 0.74046 | 0.305 |
52DAP/51DAP | 0.96487 | 1 |
53DAP/52DAP | 0.94636 | 0.862 |
55DAP/53DAP | 1.23833 | 0.181 |
57DAP/55DAP | 1.11796 | 0.975 |
62DAP/57DAP | 1.26593 | 0.133 |
68DAP/62DAP | 1.06051 | 0.897 |
68DAP/14DAP | 1.32016 | 0.2 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.76515 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.92068 | |
Ripe Pepper/Ripe Tomato | 0.77276 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.77954 | |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.44975 | 0.243 |
IL2-6/WTpooled | 0.62065 | 0.348 |
IL7-5/WTpooled | 0.64416 | 1 |
IL7-3/WTpooled | 0.77285 | 0.418 |
IL12-4/WTpooled | 0.72156 | 0.566 |
IL1-4/WTpooled | 0.60841 | 0.415 |
WT/WTpooled | 1.09232 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91161 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0126 | 1 |
DC3000/delta hrp 6h | 1.29877 | 0.95 |
DC3000/delta hrp 12h | 1.22218 | 1 |
DC3000/delta hrp 24h | 1.04722 | |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.51609 | 0.409 |
Exp 60h | 1.2715 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92044 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.98681 | 1 |
Var 12h NI row2-row1 | 0.99455 | 1 |
Var 36h I row2-row1 | 0.96385 | 1 |
Var 36h NI row2-row1 | 1.17749 | |
Var 60h I row2-row1 | 0.95702 | 0.952 |
Var 60h NI row2-row1 | 0.69876 | 0.904 |
Time course 0hI-0hNI | 0.96165 | 0.801 |
Time course 12hI-12hNI | 0.90766 | 0.65 |
Time course 36hI-36hNI | 0.84722 | 0.19 |
Time course 60hI-60hNI | 1.12491 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.22717 | 0.243 |
transgenic ySAMdc/azygous control (breaker) | 0.84946 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.82259 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04699 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04362 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.65912 | 1 |
Manapal/WT (break) | 1.03128 | 1 |
Manapal/WT (red) | 1.05021 | 1 |
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