Expression of 1-1-4.4.20.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.154160.851
27DAP/17DAP1.270220.793
39DAP/27DAP0.716920.327
41DAP/39DAP1.647950.207
42DAP/41DAP0.684640.397
43DAP/42DAP1.078251
47DAP/43DAP1.014411
52DAP/47DAP1.055650.873
57DAP/52DAP0.976340.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.333590.421
17DAP/reference1.259440.787
27DAP/reference2.42130.339
39DAP/reference1.644380.012
41DAP/reference1.694340.015
42DAP/reference1.07620.645
43DAP/referenceN/AN/A
47DAP/reference1.376810.391
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.055450.899
27DAP/17DAP1.190040.419
39DAP/27DAP1.06610.558
41DAP/39DAP0.950980.861
42DAP/41DAP1.043540.991
43DAP/42DAP1.158370.25
47DAP/43DAP0.950560.677
52DAP/47DAP0.851410.553
57DAP/52DAP0.954790.721
57DAP/7DAP0.612291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.743420.06
17DAP/reference0.89490.082
27DAP/reference0.898460.101
39DAP/reference0.708460.012
41DAP/reference0.898580.184
42DAP/reference0.776610.014
43DAP/reference0.778010.023
47DAP/reference0.898940.293
52DAP/reference0.937010.363
57DAP/reference0.792030.015

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.879520.182
17DAP/reference0.916540.307
27DAP/reference0.924120.327
39DAP/reference0.698520.047
41DAP/reference0.894030.231
42DAP/reference0.974830.534
43DAP/reference1.583290.407
47DAP/reference1.225030.24
52DAP/reference0.946970.351
57DAP/reference1.192770.146

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.979920.566
17DAP/reference1.090870.405
27DAP/reference0.891230.206
39DAP/reference0.854490.046
41DAP/reference1.008030.826
42DAP/reference1.782470.02
43DAP/reference1.285650.465
47DAP/reference0.92320.269
52DAP/reference1.079310.801
57DAP/reference1.380890.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.983411
26DAP/20DAP1.64514
34DAP/26DAP1.731370.819
51DAP/34DAP1.062030.692
52DAP/51DAP0.901971
53DAP/52DAP1.09650.819
55DAP/53DAP1.311220.142
57DAP/55DAP1.170850.935
62DAP/57DAP0.958230.871
68DAP/62DAP1.301290.23
68DAP/14DAP1.265520.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.351310.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.054220.835
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.93937
Mature Eggplant/Ripe Tomato0.475651

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.045081
1-1-2/M820.904151
12-2/M821.49795
12-4/M820.939130.358
1-3/M820.68694
2-1-1/M820.7243
2-1/M82N/AN/A
2-6/M821.070561
3-2/M820.967361
4-1-1/M820.89111
4-1/M821.291361
4-3-2/M821.10441
4-3/M820.60279
5-3/M821.027811
6-2/M820.77161
6-3/M820.968971
7-1/M821.219631
7-2/M820.88770.881
9-3-2/M820.917410.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.218890.277
IL2-6/WTpooled1.019051
IL7-5/WTpooled0.761631
IL7-3/WTpooled1.016361
IL12-4/WTpooled0.918591
IL1-4/WTpooled0.698110.699
WT/WTpooled0.990411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018841
DC3000/delta hrp 6h4.98925
DC3000/delta hrp 12h1.315651
DC3000/delta hrp 24h1.096370.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.552031
Exp 36h3.072440.693
Exp 60h2.04010.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.065141
Var 0hN/AN/A
Var 12h I row2-row11.086330.22
Var 12h NI row2-row11.068181
Var 36h I row2-row11.047451
Var 36h NI row2-row10.94010.791
Var 60h I row2-row10.851920.306
Var 60h NI row2-row10.93361
Time course 0hI-0hNI1.14570.662
Time course 12hI-12hNI1.036540.786
Time course 36hI-36hNI1.401620.023
Time course 60hI-60hNI6.492830.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.911371

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.842880.424