Expression of 1-1-4.4.20.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15416 | 0.851 |
27DAP/17DAP | 1.27022 | 0.793 |
39DAP/27DAP | 0.71692 | 0.327 |
41DAP/39DAP | 1.64795 | 0.207 |
42DAP/41DAP | 0.68464 | 0.397 |
43DAP/42DAP | 1.07825 | 1 |
47DAP/43DAP | 1.01441 | 1 |
52DAP/47DAP | 1.05565 | 0.873 |
57DAP/52DAP | 0.97634 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33359 | 0.421 |
17DAP/reference | 1.25944 | 0.787 |
27DAP/reference | 2.4213 | 0.339 |
39DAP/reference | 1.64438 | 0.012 |
41DAP/reference | 1.69434 | 0.015 |
42DAP/reference | 1.0762 | 0.645 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.37681 | 0.391 |
52DAP/reference | N/A | N/A |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05545 | 0.899 |
27DAP/17DAP | 1.19004 | 0.419 |
39DAP/27DAP | 1.0661 | 0.558 |
41DAP/39DAP | 0.95098 | 0.861 |
42DAP/41DAP | 1.04354 | 0.991 |
43DAP/42DAP | 1.15837 | 0.25 |
47DAP/43DAP | 0.95056 | 0.677 |
52DAP/47DAP | 0.85141 | 0.553 |
57DAP/52DAP | 0.95479 | 0.721 |
57DAP/7DAP | 0.61229 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74342 | 0.06 |
17DAP/reference | 0.8949 | 0.082 |
27DAP/reference | 0.89846 | 0.101 |
39DAP/reference | 0.70846 | 0.012 |
41DAP/reference | 0.89858 | 0.184 |
42DAP/reference | 0.77661 | 0.014 |
43DAP/reference | 0.77801 | 0.023 |
47DAP/reference | 0.89894 | 0.293 |
52DAP/reference | 0.93701 | 0.363 |
57DAP/reference | 0.79203 | 0.015 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87952 | 0.182 |
17DAP/reference | 0.91654 | 0.307 |
27DAP/reference | 0.92412 | 0.327 |
39DAP/reference | 0.69852 | 0.047 |
41DAP/reference | 0.89403 | 0.231 |
42DAP/reference | 0.97483 | 0.534 |
43DAP/reference | 1.58329 | 0.407 |
47DAP/reference | 1.22503 | 0.24 |
52DAP/reference | 0.94697 | 0.351 |
57DAP/reference | 1.19277 | 0.146 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97992 | 0.566 |
17DAP/reference | 1.09087 | 0.405 |
27DAP/reference | 0.89123 | 0.206 |
39DAP/reference | 0.85449 | 0.046 |
41DAP/reference | 1.00803 | 0.826 |
42DAP/reference | 1.78247 | 0.02 |
43DAP/reference | 1.28565 | 0.465 |
47DAP/reference | 0.9232 | 0.269 |
52DAP/reference | 1.07931 | 0.801 |
57DAP/reference | 1.38089 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98341 | 1 |
26DAP/20DAP | 1.64514 | |
34DAP/26DAP | 1.73137 | 0.819 |
51DAP/34DAP | 1.06203 | 0.692 |
52DAP/51DAP | 0.90197 | 1 |
53DAP/52DAP | 1.0965 | 0.819 |
55DAP/53DAP | 1.31122 | 0.142 |
57DAP/55DAP | 1.17085 | 0.935 |
62DAP/57DAP | 0.95823 | 0.871 |
68DAP/62DAP | 1.30129 | 0.23 |
68DAP/14DAP | 1.26552 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35131 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.05422 | 0.835 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.93937 | |
Mature Eggplant/Ripe Tomato | 0.47565 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04508 | 1 |
1-1-2/M82 | 0.90415 | 1 |
12-2/M82 | 1.49795 | |
12-4/M82 | 0.93913 | 0.358 |
1-3/M82 | 0.68694 | |
2-1-1/M82 | 0.7243 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.07056 | 1 |
3-2/M82 | 0.96736 | 1 |
4-1-1/M82 | 0.8911 | 1 |
4-1/M82 | 1.29136 | 1 |
4-3-2/M82 | 1.10441 | |
4-3/M82 | 0.60279 | |
5-3/M82 | 1.02781 | 1 |
6-2/M82 | 0.77161 | |
6-3/M82 | 0.96897 | 1 |
7-1/M82 | 1.21963 | 1 |
7-2/M82 | 0.8877 | 0.881 |
9-3-2/M82 | 0.91741 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.21889 | 0.277 |
IL2-6/WTpooled | 1.01905 | 1 |
IL7-5/WTpooled | 0.76163 | 1 |
IL7-3/WTpooled | 1.01636 | 1 |
IL12-4/WTpooled | 0.91859 | 1 |
IL1-4/WTpooled | 0.69811 | 0.699 |
WT/WTpooled | 0.99041 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01884 | 1 |
DC3000/delta hrp 6h | 4.98925 | |
DC3000/delta hrp 12h | 1.31565 | 1 |
DC3000/delta hrp 24h | 1.09637 | 0.336 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.55203 | 1 |
Exp 36h | 3.07244 | 0.693 |
Exp 60h | 2.0401 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06514 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.08633 | 0.22 |
Var 12h NI row2-row1 | 1.06818 | 1 |
Var 36h I row2-row1 | 1.04745 | 1 |
Var 36h NI row2-row1 | 0.9401 | 0.791 |
Var 60h I row2-row1 | 0.85192 | 0.306 |
Var 60h NI row2-row1 | 0.9336 | 1 |
Time course 0hI-0hNI | 1.1457 | 0.662 |
Time course 12hI-12hNI | 1.03654 | 0.786 |
Time course 36hI-36hNI | 1.40162 | 0.023 |
Time course 60hI-60hNI | 6.49283 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.91137 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.84288 | 0.424 |
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