Expression of 1-1-4.4.3.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21802 | 0.63 |
27DAP/17DAP | 0.83427 | 0.491 |
39DAP/27DAP | 0.9324 | 0.641 |
41DAP/39DAP | 1.0786 | 1 |
42DAP/41DAP | 0.95883 | 1 |
43DAP/42DAP | 0.96233 | 0.909 |
47DAP/43DAP | 1.1067 | 0.659 |
52DAP/47DAP | 0.8769 | 0.685 |
57DAP/52DAP | 0.84888 | 0.74 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74204 | 0.033 |
17DAP/reference | 0.89932 | 0.046 |
27DAP/reference | 0.91601 | 0.037 |
39DAP/reference | 0.85628 | 0.058 |
41DAP/reference | 0.8292 | 0.008 |
42DAP/reference | 1.38678 | 0.008 |
43DAP/reference | 1.52229 | |
47DAP/reference | 1.37879 | 0.167 |
52DAP/reference | 1.40116 | 0.012 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.43917 | 0.054 |
27DAP/17DAP | 0.88483 | 0.508 |
39DAP/27DAP | 0.64977 | 0.031 |
41DAP/39DAP | 1.09551 | 0.603 |
42DAP/41DAP | 0.89597 | 0.3 |
43DAP/42DAP | 0.975 | 0.774 |
47DAP/43DAP | 0.95891 | 0.637 |
52DAP/47DAP | 1.04394 | 0.892 |
57DAP/52DAP | 1.16934 | 0.311 |
57DAP/7DAP | 0.64024 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.67794 | 0.051 |
17DAP/reference | 1.2369 | 0.244 |
27DAP/reference | 1.31204 | 0.014 |
39DAP/reference | 1.34415 | 0.024 |
41DAP/reference | 1.11463 | 0.402 |
42DAP/reference | 1.42917 | 0.037 |
43DAP/reference | 1.50114 | 0.008 |
47DAP/reference | 1.25542 | 0.43 |
52DAP/reference | 1.3713 | 0.019 |
57DAP/reference | 1.37064 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9602 | 0.548 |
17DAP/reference | 0.91479 | 0.17 |
27DAP/reference | 0.83413 | 0.06 |
39DAP/reference | 0.90824 | 0.173 |
41DAP/reference | 0.77363 | 0.039 |
42DAP/reference | 0.87692 | 0.108 |
43DAP/reference | 0.89988 | 0.229 |
47DAP/reference | 0.84999 | 0.032 |
52DAP/reference | 0.76223 | 0.004 |
57DAP/reference | 0.75362 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.428 | 0.057 |
17DAP/reference | 1.00192 | 0.778 |
27DAP/reference | 1.09455 | 0.373 |
39DAP/reference | 1.22323 | 0.151 |
41DAP/reference | 0.93698 | 0.331 |
42DAP/reference | 1.23814 | 0.099 |
43DAP/reference | 1.49984 | 0.017 |
47DAP/reference | 1.36137 | 0.014 |
52DAP/reference | 1.30845 | 0.059 |
57DAP/reference | 1.70873 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 3.6633 | 0.966 |
26DAP/20DAP | 1.12481 | 0.865 |
34DAP/26DAP | 0.91986 | 0.702 |
51DAP/34DAP | 0.60436 | 0.057 |
52DAP/51DAP | 1.14632 | 0.377 |
53DAP/52DAP | 0.7929 | 0.242 |
55DAP/53DAP | 0.93863 | 0.489 |
57DAP/55DAP | 0.59663 | 0.037 |
62DAP/57DAP | 0.56402 | 0.01 |
68DAP/62DAP | 1.00166 | 0.939 |
68DAP/14DAP | 7.40479 | 0.419 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.50734 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.11063 | 0.591 |
Mature Green Tomato/Ripe Tomato | 1.03983 | 0.814 |
Immature Eggplant/Mature Eggplant | 2.87418 | 0.321 |
Ripe Pepper/Ripe Tomato | 0.62309 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.34855 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.40277 | 0.591 |
1-1-2/M82 | 1.26194 | 1 |
12-2/M82 | 1.20052 | |
12-4/M82 | 0.92744 | 1 |
1-3/M82 | 1.96582 | 0.255 |
2-1-1/M82 | 0.89031 | 0.465 |
2-1/M82 | 0.79436 | 0.345 |
2-6/M82 | 0.99675 | 1 |
3-2/M82 | 0.6799 | 1 |
4-1-1/M82 | 1.16225 | 1 |
4-1/M82 | 0.77695 | |
4-3-2/M82 | 1.16947 | 1 |
4-3/M82 | 1.61214 | 0.268 |
5-3/M82 | 0.99842 | 1 |
6-2/M82 | 1.20174 | 0.195 |
6-3/M82 | 0.96727 | 1 |
7-1/M82 | 0.59611 | 0.452 |
7-2/M82 | 1.17206 | 1 |
9-3-2/M82 | 0.97647 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90209 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.10495 | 0.792 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.95912 | 1 |
IL1-4/WTpooled | 0.8591 | 0.699 |
WT/WTpooled | 1.82308 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0952 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9203 | 0.868 |
DC3000/delta hrp 6h | 0.87421 | 0.95 |
DC3000/delta hrp 12h | 1.25308 | 1 |
DC3000/delta hrp 24h | 1.17003 | 0.221 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.56224 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.43002 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11717 | 1 |
Exp 36h | 1.11508 | 1 |
Exp 60h | 1.25561 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97907 | 1 |
Var 0h | 1.00638 | 1 |
Var 12h I row2-row1 | 0.76171 | 0.344 |
Var 12h NI row2-row1 | 0.93872 | 0.713 |
Var 36h I row2-row1 | 0.84323 | 0.805 |
Var 36h NI row2-row1 | 1.05587 | 1 |
Var 60h I row2-row1 | 1.41765 | 0.543 |
Var 60h NI row2-row1 | 1.05829 | 1 |
Time course 0hI-0hNI | 1.01947 | 0.867 |
Time course 12hI-12hNI | 0.97343 | 0.795 |
Time course 36hI-36hNI | 0.90112 | 0.073 |
Time course 60hI-60hNI | 0.18447 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03005 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 1.27198 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.07787 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11855 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78543 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76316 | 0.172 |
Manapal/WT (break) | 0.97317 | 1 |
Manapal/WT (red) | 0.97261 | 0.863 |
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