Expression of 1-1-4.4.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.218020.63
27DAP/17DAP0.834270.491
39DAP/27DAP0.93240.641
41DAP/39DAP1.07861
42DAP/41DAP0.958831
43DAP/42DAP0.962330.909
47DAP/43DAP1.10670.659
52DAP/47DAP0.87690.685
57DAP/52DAP0.848880.74

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.742040.033
17DAP/reference0.899320.046
27DAP/reference0.916010.037
39DAP/reference0.856280.058
41DAP/reference0.82920.008
42DAP/reference1.386780.008
43DAP/reference1.52229
47DAP/reference1.378790.167
52DAP/reference1.401160.012
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.439170.054
27DAP/17DAP0.884830.508
39DAP/27DAP0.649770.031
41DAP/39DAP1.095510.603
42DAP/41DAP0.895970.3
43DAP/42DAP0.9750.774
47DAP/43DAP0.958910.637
52DAP/47DAP1.043940.892
57DAP/52DAP1.169340.311
57DAP/7DAP0.640240.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.677940.051
17DAP/reference1.23690.244
27DAP/reference1.312040.014
39DAP/reference1.344150.024
41DAP/reference1.114630.402
42DAP/reference1.429170.037
43DAP/reference1.501140.008
47DAP/reference1.255420.43
52DAP/reference1.37130.019
57DAP/reference1.370640.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96020.548
17DAP/reference0.914790.17
27DAP/reference0.834130.06
39DAP/reference0.908240.173
41DAP/reference0.773630.039
42DAP/reference0.876920.108
43DAP/reference0.899880.229
47DAP/reference0.849990.032
52DAP/reference0.762230.004
57DAP/reference0.753620.003

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.4280.057
17DAP/reference1.001920.778
27DAP/reference1.094550.373
39DAP/reference1.223230.151
41DAP/reference0.936980.331
42DAP/reference1.238140.099
43DAP/reference1.499840.017
47DAP/reference1.361370.014
52DAP/reference1.308450.059
57DAP/reference1.708730.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP3.66330.966
26DAP/20DAP1.124810.865
34DAP/26DAP0.919860.702
51DAP/34DAP0.604360.057
52DAP/51DAP1.146320.377
53DAP/52DAP0.79290.242
55DAP/53DAP0.938630.489
57DAP/55DAP0.596630.037
62DAP/57DAP0.564020.01
68DAP/62DAP1.001660.939
68DAP/14DAP7.404790.419

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.507340.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.110630.591
Mature Green Tomato/Ripe Tomato1.039830.814
Immature Eggplant/Mature Eggplant2.874180.321
Ripe Pepper/Ripe Tomato0.623090.293
Mature Eggplant/Ripe Tomato0.348551

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.402770.591
1-1-2/M821.261941
12-2/M821.20052
12-4/M820.927441
1-3/M821.965820.255
2-1-1/M820.890310.465
2-1/M820.794360.345
2-6/M820.996751
3-2/M820.67991
4-1-1/M821.162251
4-1/M820.77695
4-3-2/M821.169471
4-3/M821.612140.268
5-3/M820.998421
6-2/M821.201740.195
6-3/M820.967271
7-1/M820.596110.452
7-2/M821.172061
9-3-2/M820.97647

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.902091
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.104950.792
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.959121
IL1-4/WTpooled0.85910.699
WT/WTpooled1.82308

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.09521

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.92030.868
DC3000/delta hrp 6h0.874210.95
DC3000/delta hrp 12h1.253081
DC3000/delta hrp 24h1.170030.221

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.562240.024
DC3000 delta B/DC3000 delta AB0.430020.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.117171
Exp 36h1.115081
Exp 60h1.255610.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.979071
Var 0h1.006381
Var 12h I row2-row10.761710.344
Var 12h NI row2-row10.938720.713
Var 36h I row2-row10.843230.805
Var 36h NI row2-row11.055871
Var 60h I row2-row11.417650.543
Var 60h NI row2-row11.058291
Time course 0hI-0hNI1.019470.867
Time course 12hI-12hNI0.973430.795
Time course 36hI-36hNI0.901120.073
Time course 60hI-60hNI0.184470.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.030050.612
transgenic ySAMdc/azygous control (breaker)1.271980.248
transgenic ySAMdc/azygous control (red)1.077870.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.118550.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.785430.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.763160.172
Manapal/WT (break)0.973171
Manapal/WT (red)0.972610.863