Expression of 1-1-4.4.3.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.30105 | 0.336 |
27DAP/17DAP | 1.1701 | 0.859 |
39DAP/27DAP | 0.74918 | 0.286 |
41DAP/39DAP | 1.34438 | 0.423 |
42DAP/41DAP | 1.02433 | 1 |
43DAP/42DAP | 1.05483 | 1 |
47DAP/43DAP | 1.09195 | 0.769 |
52DAP/47DAP | 0.99909 | 0.933 |
57DAP/52DAP | 0.92496 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07387 | 0.522 |
17DAP/reference | 1.02337 | 0.606 |
27DAP/reference | 1.04334 | 0.357 |
39DAP/reference | 0.97994 | 0.68 |
41DAP/reference | 0.99824 | 1 |
42DAP/reference | 1.09329 | 0.033 |
43DAP/reference | 0.9637 | 0.48 |
47DAP/reference | 1.06376 | 0.023 |
52DAP/reference | 1.12271 | 0.453 |
57DAP/reference | 1.05007 | 0.463 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05784 | 0.91 |
27DAP/17DAP | 1.00536 | 0.943 |
39DAP/27DAP | 0.99657 | 0.997 |
41DAP/39DAP | 0.99508 | 0.997 |
42DAP/41DAP | 0.9059 | 0.377 |
43DAP/42DAP | 0.9805 | 0.831 |
47DAP/43DAP | 1.00363 | 0.989 |
52DAP/47DAP | 1.06982 | 0.8 |
57DAP/52DAP | 0.88493 | 0.391 |
57DAP/7DAP | 1.23166 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06617 | 0.999 |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.72709 | 0.066 |
39DAP/reference | 1.17591 | 0.57 |
41DAP/reference | 1.07101 | 0.848 |
42DAP/reference | 1.14688 | 0.686 |
43DAP/reference | 0.8472 | 0.132 |
47DAP/reference | 0.9597 | 0.504 |
52DAP/reference | 1.30609 | 0.197 |
57DAP/reference | 0.85729 | 0.137 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18646 | 0.078 |
17DAP/reference | 1.12541 | 0.089 |
27DAP/reference | 1.14999 | 0.359 |
39DAP/reference | 1.22058 | 0.16 |
41DAP/reference | 1.04678 | 0.752 |
42DAP/reference | 1.12692 | 0.302 |
43DAP/reference | 1.02536 | 0.846 |
47DAP/reference | 0.99533 | 0.695 |
52DAP/reference | 1.15092 | 0.006 |
57DAP/reference | 1.09984 | 0.123 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05328 | 0.758 |
17DAP/reference | 1.15187 | 0.043 |
27DAP/reference | 1.08517 | |
39DAP/reference | 1.34121 | |
41DAP/reference | 1.3209 | 0.554 |
42DAP/reference | 1.26396 | 0.49 |
43DAP/reference | 1.47546 | 0.033 |
47DAP/reference | 1.04193 | 0.63 |
52DAP/reference | 0.94271 | 0.562 |
57DAP/reference | 1.13211 | 0.304 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95988 | 1 |
26DAP/20DAP | 0.79566 | 0.512 |
34DAP/26DAP | 0.92295 | 0.702 |
51DAP/34DAP | 0.95433 | 0.611 |
52DAP/51DAP | 1.08907 | 0.616 |
53DAP/52DAP | 1.00232 | 1 |
55DAP/53DAP | 1.22702 | 0.061 |
57DAP/55DAP | 0.9682 | 0.823 |
62DAP/57DAP | 1.08505 | 1 |
68DAP/62DAP | 0.79746 | 0.345 |
68DAP/14DAP | 0.83194 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84104 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.3703 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.90068 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.60151 | 0.063 |
Ripe Pepper/Ripe Tomato | 2.33248 | 1 |
Mature Eggplant/Ripe Tomato | 2.76794 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99771 | 1 |
1-1-2/M82 | 1.06581 | 1 |
12-2/M82 | 1.14615 | 1 |
12-4/M82 | 1.09392 | |
1-3/M82 | 1.08986 | 1 |
2-1-1/M82 | 1.45326 | |
2-1/M82 | 0.64584 | |
2-6/M82 | 1.04269 | 1 |
3-2/M82 | 0.81719 | |
4-1-1/M82 | 0.87369 | 1 |
4-1/M82 | 1.58926 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.74007 | |
5-3/M82 | 1.00896 | |
6-2/M82 | 0.74578 | |
6-3/M82 | 0.96271 | |
7-1/M82 | 0.81437 | 0.466 |
7-2/M82 | 0.64604 | |
9-3-2/M82 | 0.93154 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78335 | 0.321 |
IL2-6/WTpooled | 1.30264 | 0.584 |
IL7-5/WTpooled | 1.18504 | 0.792 |
IL7-3/WTpooled | 0.87698 | 0.418 |
IL12-4/WTpooled | 0.93618 | 1 |
IL1-4/WTpooled | 0.99581 | 1 |
WT/WTpooled | 1.08531 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.78938 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00899 | 1 |
DC3000/delta hrp 6h | 0.9861 | 0.95 |
DC3000/delta hrp 12h | 1.12168 | 1 |
DC3000/delta hrp 24h | 0.90654 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.85372 | 0.196 |
DC3000 delta B/DC3000 delta AB | 0.94271 | 0.589 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93396 | 1 |
Exp 36h | 0.73054 | 0.449 |
Exp 60h | 0.80486 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9658 | 1 |
Var 0h | 0.7871 | 1 |
Var 12h I row2-row1 | 1.02346 | 0.692 |
Var 12h NI row2-row1 | 0.80711 | 0.546 |
Var 36h I row2-row1 | 0.7764 | 0.575 |
Var 36h NI row2-row1 | 1.31187 | 1 |
Var 60h I row2-row1 | 0.85829 | |
Var 60h NI row2-row1 | 1.13688 | 0.691 |
Time course 0hI-0hNI | 0.99571 | 1 |
Time course 12hI-12hNI | 0.90054 | 0.279 |
Time course 36hI-36hNI | 0.72035 | 0.023 |
Time course 60hI-60hNI | 0.94865 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96972 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.28281 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09112 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02617 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.72987 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.98938 | 0.096 |
Manapal/WT (break) | 1.66367 | 0.183 |
Manapal/WT (red) | 1.42089 | 0.142 |
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