Expression of 1-1-4.4.3.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.301050.336
27DAP/17DAP1.17010.859
39DAP/27DAP0.749180.286
41DAP/39DAP1.344380.423
42DAP/41DAP1.024331
43DAP/42DAP1.054831
47DAP/43DAP1.091950.769
52DAP/47DAP0.999090.933
57DAP/52DAP0.924960.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.073870.522
17DAP/reference1.023370.606
27DAP/reference1.043340.357
39DAP/reference0.979940.68
41DAP/reference0.998241
42DAP/reference1.093290.033
43DAP/reference0.96370.48
47DAP/reference1.063760.023
52DAP/reference1.122710.453
57DAP/reference1.050070.463

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.057840.91
27DAP/17DAP1.005360.943
39DAP/27DAP0.996570.997
41DAP/39DAP0.995080.997
42DAP/41DAP0.90590.377
43DAP/42DAP0.98050.831
47DAP/43DAP1.003630.989
52DAP/47DAP1.069820.8
57DAP/52DAP0.884930.391
57DAP/7DAP1.231661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066170.999
17DAP/referenceN/AN/A
27DAP/reference0.727090.066
39DAP/reference1.175910.57
41DAP/reference1.071010.848
42DAP/reference1.146880.686
43DAP/reference0.84720.132
47DAP/reference0.95970.504
52DAP/reference1.306090.197
57DAP/reference0.857290.137

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.186460.078
17DAP/reference1.125410.089
27DAP/reference1.149990.359
39DAP/reference1.220580.16
41DAP/reference1.046780.752
42DAP/reference1.126920.302
43DAP/reference1.025360.846
47DAP/reference0.995330.695
52DAP/reference1.150920.006
57DAP/reference1.099840.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053280.758
17DAP/reference1.151870.043
27DAP/reference1.08517
39DAP/reference1.34121
41DAP/reference1.32090.554
42DAP/reference1.263960.49
43DAP/reference1.475460.033
47DAP/reference1.041930.63
52DAP/reference0.942710.562
57DAP/reference1.132110.304

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.959881
26DAP/20DAP0.795660.512
34DAP/26DAP0.922950.702
51DAP/34DAP0.954330.611
52DAP/51DAP1.089070.616
53DAP/52DAP1.002321
55DAP/53DAP1.227020.061
57DAP/55DAP0.96820.823
62DAP/57DAP1.085051
68DAP/62DAP0.797460.345
68DAP/14DAP0.831940.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.841040.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.37030.058
Mature Green Tomato/Ripe Tomato1.900680.016
Immature Eggplant/Mature Eggplant0.601510.063
Ripe Pepper/Ripe Tomato2.332481
Mature Eggplant/Ripe Tomato2.767940.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.997711
1-1-2/M821.065811
12-2/M821.146151
12-4/M821.09392
1-3/M821.089861
2-1-1/M821.45326
2-1/M820.64584
2-6/M821.042691
3-2/M820.81719
4-1-1/M820.873691
4-1/M821.58926
4-3-2/M82N/AN/A
4-3/M820.74007
5-3/M821.00896
6-2/M820.74578
6-3/M820.96271
7-1/M820.814370.466
7-2/M820.64604
9-3-2/M820.93154

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.783350.321
IL2-6/WTpooled1.302640.584
IL7-5/WTpooled1.185040.792
IL7-3/WTpooled0.876980.418
IL12-4/WTpooled0.936181
IL1-4/WTpooled0.995811
WT/WTpooled1.085311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.789380.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.008991
DC3000/delta hrp 6h0.98610.95
DC3000/delta hrp 12h1.121681
DC3000/delta hrp 24h0.906540.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.853720.196
DC3000 delta B/DC3000 delta AB0.942710.589

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.933961
Exp 36h0.730540.449
Exp 60h0.804860.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.96581
Var 0h0.78711
Var 12h I row2-row11.023460.692
Var 12h NI row2-row10.807110.546
Var 36h I row2-row10.77640.575
Var 36h NI row2-row11.311871
Var 60h I row2-row10.85829
Var 60h NI row2-row11.136880.691
Time course 0hI-0hNI0.995711
Time course 12hI-12hNI0.900540.279
Time course 36hI-36hNI0.720350.023
Time course 60hI-60hNI0.948650.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.969720.614
transgenic ySAMdc/azygous control (breaker)1.282811
transgenic ySAMdc/azygous control (red)1.091120.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026170.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.729870.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.989380.096
Manapal/WT (break)1.663670.183
Manapal/WT (red)1.420890.142