Expression of 1-1-4.4.4.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.82317 | 0.303 |
27DAP/17DAP | 0.88713 | 0.736 |
39DAP/27DAP | 1.33699 | 0.325 |
41DAP/39DAP | 0.97526 | 0.845 |
42DAP/41DAP | 0.61263 | 0.262 |
43DAP/42DAP | 0.74238 | 0.36 |
47DAP/43DAP | 0.63683 | 0.107 |
52DAP/47DAP | 1.54815 | 0.274 |
57DAP/52DAP | 0.99058 | 0.976 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94731 | 0.336 |
17DAP/reference | 0.98785 | 0.777 |
27DAP/reference | 0.9528 | 0.275 |
39DAP/reference | 0.95686 | 0.541 |
41DAP/reference | 0.89887 | 0.085 |
42DAP/reference | 0.89627 | 0.018 |
43DAP/reference | 0.89778 | 0.287 |
47DAP/reference | 0.97472 | 0.418 |
52DAP/reference | 1.05024 | 0.407 |
57DAP/reference | 1.00061 | 0.767 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.4315 | 0.034 |
27DAP/17DAP | 1.73722 | 0.042 |
39DAP/27DAP | 0.3366 | 0.071 |
41DAP/39DAP | 1.30655 | 0.705 |
42DAP/41DAP | 1.10484 | 0.976 |
43DAP/42DAP | 1.54071 | 0.019 |
47DAP/43DAP | 1.04038 | 0.93 |
52DAP/47DAP | 0.74353 | 0.179 |
57DAP/52DAP | 1.20477 | 0.36 |
57DAP/7DAP | 0.58437 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13042 | 0.501 |
17DAP/reference | 1.21691 | 0.297 |
27DAP/reference | 1.14784 | 0.551 |
39DAP/reference | 1.33208 | 0.05 |
41DAP/reference | 1.27232 | 0.141 |
42DAP/reference | 1.32687 | 0.132 |
43DAP/reference | 1.11375 | 0.074 |
47DAP/reference | 0.88602 | 0.128 |
52DAP/reference | 1.17787 | 0.212 |
57DAP/reference | 1.00854 | 0.719 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29668 | 0.43 |
17DAP/reference | 0.88662 | 0.23 |
27DAP/reference | 0.93861 | 0.229 |
39DAP/reference | 1.07874 | 0.436 |
41DAP/reference | 0.87125 | 0.083 |
42DAP/reference | 0.85243 | 0.061 |
43DAP/reference | 0.98209 | 0.592 |
47DAP/reference | 0.89126 | 0.069 |
52DAP/reference | 0.97147 | 0.576 |
57DAP/reference | 0.89028 | 0.079 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21724 | 0.19 |
17DAP/reference | 0.97007 | 0.647 |
27DAP/reference | 0.96874 | 0.624 |
39DAP/reference | 0.89267 | 0.271 |
41DAP/reference | 1.02924 | 0.984 |
42DAP/reference | 1.3886 | 0.124 |
43DAP/reference | 1.02644 | 0.827 |
47DAP/reference | 0.90973 | 0.306 |
52DAP/reference | 0.92167 | 0.36 |
57DAP/reference | 1.05848 | 0.673 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.46408 | 0.966 |
26DAP/20DAP | 2.39269 | 0.097 |
34DAP/26DAP | 0.87264 | 0.455 |
51DAP/34DAP | 0.97308 | 0.791 |
52DAP/51DAP | 0.89141 | 1 |
53DAP/52DAP | 0.94699 | 0.783 |
55DAP/53DAP | 0.94948 | 0.675 |
57DAP/55DAP | 2.24803 | 0.348 |
62DAP/57DAP | 1.26407 | 0.515 |
68DAP/62DAP | 1.04793 | 1 |
68DAP/14DAP | 1.24871 | 0.578 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.34312 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.17737 | 0.523 |
Immature Eggplant/Mature Eggplant | 22.2044 | |
Ripe Pepper/Ripe Tomato | 0.88016 | 1 |
Mature Eggplant/Ripe Tomato | 0.81283 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.53787 | 0.574 |
1-1-2/M82 | 1.11618 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.07205 | 0.611 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.35499 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.24614 | |
3-2/M82 | 1.24118 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.04356 | |
5-3/M82 | 0.94039 | 1 |
6-2/M82 | 1.05243 | |
6-3/M82 | 1.10965 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.15672 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.13721 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.01894 | 1 |
IL12-4/WTpooled | 0.97789 | 1 |
IL1-4/WTpooled | 1.03583 | |
WT/WTpooled | 1.03367 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97635 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02337 | 0.914 |
DC3000/delta hrp 6h | 1.25141 | 1 |
DC3000/delta hrp 12h | 1.18118 | 1 |
DC3000/delta hrp 24h | 1.58117 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.79243 | 0.045 |
DC3000 delta B/DC3000 delta AB | 0.79901 | 0.125 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09714 | 1 |
Exp 36h | 1.2387 | 1 |
Exp 60h | 1.53529 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.10297 | 0.936 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03168 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.41272 | 0.172 |
transgenic ySAMdc/azygous control (red) | 0.98815 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99536 | 0.757 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70663 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89676 | 1 |
Manapal/WT (break) | 1.01212 | 1 |
Manapal/WT (red) | 0.57211 | 0.181 |
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