Expression of 1-1-4.4.4.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.57579 | 0.022 |
27DAP/17DAP | 0.59802 | 0.084 |
39DAP/27DAP | 1.07153 | 0.798 |
41DAP/39DAP | 0.53608 | 0.052 |
42DAP/41DAP | 0.84895 | 1 |
43DAP/42DAP | 1.10992 | 0.933 |
47DAP/43DAP | 0.72128 | 0.248 |
52DAP/47DAP | 1.39225 | 0.773 |
57DAP/52DAP | 0.91763 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.0852 | 0.006 |
17DAP/reference | 1.67895 | 0.016 |
27DAP/reference | 1.87138 | 0.012 |
39DAP/reference | 0.8631 | 0.178 |
41DAP/reference | 0.83185 | 0.012 |
42DAP/reference | 0.85992 | 0.004 |
43DAP/reference | 0.7465 | 0.015 |
47DAP/reference | 0.71309 | 0.001 |
52DAP/reference | 0.64054 | 0.012 |
57DAP/reference | 0.60228 | 0.006 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80291 | 0.093 |
27DAP/17DAP | 0.93209 | 0.724 |
39DAP/27DAP | 0.58905 | 0.038 |
41DAP/39DAP | 0.33079 | 0.015 |
42DAP/41DAP | 0.94407 | 0.584 |
43DAP/42DAP | 1.87519 | 0.013 |
47DAP/43DAP | 0.63279 | 0.01 |
52DAP/47DAP | 0.87619 | 0.433 |
57DAP/52DAP | 1.04125 | 1 |
57DAP/7DAP | 0.1164 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.54384 | 0.024 |
17DAP/reference | 1.50259 | 0.009 |
27DAP/reference | 1.03393 | 0.371 |
39DAP/reference | 0.80787 | 0.02 |
41DAP/reference | 0.76904 | 0.022 |
42DAP/reference | 0.91471 | 0.235 |
43DAP/reference | 0.8855 | 0.04 |
47DAP/reference | 0.74634 | 0.035 |
52DAP/reference | 0.70745 | 0.011 |
57DAP/reference | 0.73598 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36548 | 0.083 |
17DAP/reference | 1.92187 | 0.014 |
27DAP/reference | 1.50875 | 0.055 |
39DAP/reference | 0.67114 | 0.027 |
41DAP/reference | 0.88872 | 0.112 |
42DAP/reference | 1.24738 | 0.226 |
43DAP/reference | 0.82864 | 0.049 |
47DAP/reference | 0.86475 | 0.032 |
52DAP/reference | 0.55925 | 0.004 |
57DAP/reference | 0.59808 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.6184 | 0.015 |
17DAP/reference | 1.95916 | 0.091 |
27DAP/reference | 1.98392 | 0.014 |
39DAP/reference | 1.19789 | 0.14 |
41DAP/reference | 1.03778 | 0.961 |
42DAP/reference | 0.97565 | 0.671 |
43DAP/reference | 0.73369 | 0.03 |
47DAP/reference | 0.54448 | 0.004 |
52DAP/reference | 0.49141 | 0.047 |
57DAP/reference | 0.64604 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89616 | 0.44 |
26DAP/20DAP | 0.98355 | 1 |
34DAP/26DAP | 0.91838 | 0.771 |
51DAP/34DAP | 0.6798 | 0.079 |
52DAP/51DAP | 1.1642 | 0.077 |
53DAP/52DAP | 0.67189 | 0.049 |
55DAP/53DAP | 0.92661 | 0.181 |
57DAP/55DAP | 0.83607 | 0.337 |
62DAP/57DAP | 1.08054 | 0.081 |
68DAP/62DAP | 0.84483 | 0.082 |
68DAP/14DAP | 0.45048 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.1956 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.10027 | 0.058 |
Mature Green Tomato/Ripe Tomato | 8.12697 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.47834 | 0.064 |
Ripe Pepper/Ripe Tomato | 21.5977 | 0.256 |
Mature Eggplant/Ripe Tomato | 23.9772 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93302 | |
1-1-2/M82 | 1.05852 | |
12-2/M82 | 1.15605 | 0.61 |
12-4/M82 | 1.0124 | |
1-3/M82 | 0.87724 | |
2-1-1/M82 | 0.83322 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.18387 | 0.695 |
3-2/M82 | 0.72908 | 1 |
4-1-1/M82 | 0.97571 | 1 |
4-1/M82 | 1.13802 | 0.853 |
4-3-2/M82 | 0.7954 | 1 |
4-3/M82 | 0.57317 | |
5-3/M82 | 1.03101 | 1 |
6-2/M82 | 0.90067 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.99594 | 1 |
9-3-2/M82 | 0.92616 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9513 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.09423 | |
IL1-4/WTpooled | 0.96447 | 1 |
WT/WTpooled | 1.1233 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87042 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93878 | 0.941 |
DC3000/delta hrp 6h | 0.91226 | 0.95 |
DC3000/delta hrp 12h | 1.45702 | |
DC3000/delta hrp 24h | 0.75879 | 0.257 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.59183 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.57402 | 0.025 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97308 | 1 |
Exp 36h | 0.88833 | 0.661 |
Exp 60h | 1.08484 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.10969 | 0.98 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04305 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 1.92002 | 1 |
transgenic ySAMdc/azygous control (red) | 2.1456 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85377 | 0.14 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.91006 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0931 | 0.093 |
Manapal/WT (break) | 2.3161 | 0.381 |
Manapal/WT (red) | 2.45289 | 0.164 |
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