Expression of 1-1-4.4.4.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.575790.022
27DAP/17DAP0.598020.084
39DAP/27DAP1.071530.798
41DAP/39DAP0.536080.052
42DAP/41DAP0.848951
43DAP/42DAP1.109920.933
47DAP/43DAP0.721280.248
52DAP/47DAP1.392250.773
57DAP/52DAP0.917630.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.08520.006
17DAP/reference1.678950.016
27DAP/reference1.871380.012
39DAP/reference0.86310.178
41DAP/reference0.831850.012
42DAP/reference0.859920.004
43DAP/reference0.74650.015
47DAP/reference0.713090.001
52DAP/reference0.640540.012
57DAP/reference0.602280.006

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.802910.093
27DAP/17DAP0.932090.724
39DAP/27DAP0.589050.038
41DAP/39DAP0.330790.015
42DAP/41DAP0.944070.584
43DAP/42DAP1.875190.013
47DAP/43DAP0.632790.01
52DAP/47DAP0.876190.433
57DAP/52DAP1.041251
57DAP/7DAP0.11640.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.543840.024
17DAP/reference1.502590.009
27DAP/reference1.033930.371
39DAP/reference0.807870.02
41DAP/reference0.769040.022
42DAP/reference0.914710.235
43DAP/reference0.88550.04
47DAP/reference0.746340.035
52DAP/reference0.707450.011
57DAP/reference0.735980.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.365480.083
17DAP/reference1.921870.014
27DAP/reference1.508750.055
39DAP/reference0.671140.027
41DAP/reference0.888720.112
42DAP/reference1.247380.226
43DAP/reference0.828640.049
47DAP/reference0.864750.032
52DAP/reference0.559250.004
57DAP/reference0.598080.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.61840.015
17DAP/reference1.959160.091
27DAP/reference1.983920.014
39DAP/reference1.197890.14
41DAP/reference1.037780.961
42DAP/reference0.975650.671
43DAP/reference0.733690.03
47DAP/reference0.544480.004
52DAP/reference0.491410.047
57DAP/reference0.646040.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.896160.44
26DAP/20DAP0.983551
34DAP/26DAP0.918380.771
51DAP/34DAP0.67980.079
52DAP/51DAP1.16420.077
53DAP/52DAP0.671890.049
55DAP/53DAP0.926610.181
57DAP/55DAP0.836070.337
62DAP/57DAP1.080540.081
68DAP/62DAP0.844830.082
68DAP/14DAP0.450480.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.19560.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.100270.058
Mature Green Tomato/Ripe Tomato8.126970.015
Immature Eggplant/Mature Eggplant0.478340.064
Ripe Pepper/Ripe Tomato21.59770.256
Mature Eggplant/Ripe Tomato23.97720.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.93302
1-1-2/M821.05852
12-2/M821.156050.61
12-4/M821.0124
1-3/M820.87724
2-1-1/M820.83322
2-1/M82N/AN/A
2-6/M821.183870.695
3-2/M820.729081
4-1-1/M820.975711
4-1/M821.138020.853
4-3-2/M820.79541
4-3/M820.57317
5-3/M821.031011
6-2/M820.90067
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.995941
9-3-2/M820.92616

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.95131
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.09423
IL1-4/WTpooled0.964471
WT/WTpooled1.12331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.870420.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.938780.941
DC3000/delta hrp 6h0.912260.95
DC3000/delta hrp 12h1.45702
DC3000/delta hrp 24h0.758790.257

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.591830.025
DC3000 delta B/DC3000 delta AB0.574020.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.973081
Exp 36h0.888330.661
Exp 60h1.084841

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.109690.98
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.043050.921
transgenic ySAMdc/azygous control (breaker)1.920021
transgenic ySAMdc/azygous control (red)2.14561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.853770.14

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt3.910060.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.09310.093
Manapal/WT (break)2.31610.381
Manapal/WT (red)2.452890.164