Expression of 1-1-4.4.4.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7119 | 0.206 |
27DAP/17DAP | 0.85368 | 0.644 |
39DAP/27DAP | 1.22674 | 0.672 |
41DAP/39DAP | 1.07546 | 0.715 |
42DAP/41DAP | 0.98679 | 1 |
43DAP/42DAP | 1.16716 | 0.933 |
47DAP/43DAP | 0.9056 | 0.671 |
52DAP/47DAP | 1.04905 | 0.875 |
57DAP/52DAP | 1.07412 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23629 | 0.02 |
17DAP/reference | 1.01803 | 0.74 |
27DAP/reference | 1.23919 | 0.016 |
39DAP/reference | 1.01588 | 0.828 |
41DAP/reference | 1.16572 | 0.221 |
42DAP/reference | 1.2203 | 0.108 |
43DAP/reference | 1.11722 | |
47DAP/reference | 1.22197 | 0.207 |
52DAP/reference | 0.88231 | 0.183 |
57DAP/reference | 0.5874 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79076 | 0.158 |
27DAP/17DAP | 1.50761 | 0.045 |
39DAP/27DAP | 1.05464 | 0.854 |
41DAP/39DAP | 0.70871 | 0.046 |
42DAP/41DAP | 1.07853 | 1 |
43DAP/42DAP | 1.59966 | 0.017 |
47DAP/43DAP | 0.8281 | 0.086 |
52DAP/47DAP | 0.93554 | 0.739 |
57DAP/52DAP | 0.69109 | 0.059 |
57DAP/7DAP | 0.83871 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11388 | 0.28 |
17DAP/reference | 0.8622 | 0.094 |
27DAP/reference | 0.71583 | 0.01 |
39DAP/reference | 0.84553 | 0.073 |
41DAP/reference | 0.75369 | 0.029 |
42DAP/reference | 0.69969 | 0.02 |
43DAP/reference | 0.60272 | 0.011 |
47DAP/reference | 0.89059 | 0.383 |
52DAP/reference | 0.53137 | 0.01 |
57DAP/reference | 0.48845 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2225 | 0.443 |
17DAP/reference | 0.89088 | 0.095 |
27DAP/reference | 1.01429 | 1 |
39DAP/reference | 0.91084 | 0.227 |
41DAP/reference | 1.00925 | 0.615 |
42DAP/reference | 0.9462 | 0.261 |
43DAP/reference | 0.7846 | 0.125 |
47DAP/reference | 1.18645 | 0.087 |
52DAP/reference | 0.85661 | 0.021 |
57DAP/reference | 0.9637 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39176 | 0.037 |
17DAP/reference | 1.10187 | 0.924 |
27DAP/reference | 1.04261 | 0.834 |
39DAP/reference | 0.98371 | 0.591 |
41DAP/reference | 0.76931 | 0.055 |
42DAP/reference | 0.70217 | 0.036 |
43DAP/reference | 0.77271 | 0.095 |
47DAP/reference | 0.90807 | 0.174 |
52DAP/reference | 0.87681 | 0.277 |
57DAP/reference | 0.8661 | 0.082 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.29453 | 0.966 |
26DAP/20DAP | 1.76369 | 0.098 |
34DAP/26DAP | 0.80872 | 0.21 |
51DAP/34DAP | 0.70443 | 0.049 |
52DAP/51DAP | 1.48186 | 0.246 |
53DAP/52DAP | 1.0634 | 0.797 |
55DAP/53DAP | 0.95341 | 0.735 |
57DAP/55DAP | 1.01285 | 1 |
62DAP/57DAP | 1.69592 | 0.011 |
68DAP/62DAP | 0.93005 | 0.722 |
68DAP/14DAP | 1.49521 | 0.249 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.90781 | 0.025 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.34152 | 0.02 |
Immature Eggplant/Mature Eggplant | 4.36916 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.4929 | 0.224 |
Mature Eggplant/Ripe Tomato | 3.26137 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.17226 | 0.432 |
1-1-2/M82 | 1.09756 | 1 |
12-2/M82 | 0.81752 | |
12-4/M82 | 1.12017 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.6409 | |
2-1/M82 | 0.71068 | |
2-6/M82 | 1.06576 | 0.452 |
3-2/M82 | 1.50867 | |
4-1-1/M82 | 1.75528 | 0.968 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.7121 | |
4-3/M82 | 1.93734 | |
5-3/M82 | 1.14433 | |
6-2/M82 | 2.66758 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.70647 | 0.452 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.77486 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93281 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.66628 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.08412 | 0.785 |
IL1-4/WTpooled | 0.9124 | |
WT/WTpooled | 0.7805 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.35364 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94965 | 1 |
DC3000/delta hrp 6h | 0.92863 | 0.95 |
DC3000/delta hrp 12h | 0.69099 | 1 |
DC3000/delta hrp 24h | 3.13765 | 0.05 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05555 | 0.598 |
DC3000 delta B/DC3000 delta AB | 0.87035 | 0.195 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97248 | 1 |
Exp 36h | 1.12257 | 1 |
Exp 60h | 1.44537 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0211 | 1 |
Var 0h | 1.01559 | 1 |
Var 12h I row2-row1 | 0.82137 | 0.627 |
Var 12h NI row2-row1 | 0.9521 | 0.906 |
Var 36h I row2-row1 | 1.06481 | 1 |
Var 36h NI row2-row1 | 0.95284 | 0.743 |
Var 60h I row2-row1 | 0.70815 | 0.293 |
Var 60h NI row2-row1 | 1.11572 | 0.904 |
Time course 0hI-0hNI | 0.93326 | 0.609 |
Time course 12hI-12hNI | 1.04687 | 0.836 |
Time course 36hI-36hNI | 1.10978 | 0.453 |
Time course 60hI-60hNI | 2.41362 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96854 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 1.1511 | 1 |
transgenic ySAMdc/azygous control (red) | 1.1226 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.17332 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04563 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.66974 | 0.084 |
Manapal/WT (break) | 0.84918 | 1 |
Manapal/WT (red) | 1.24513 | 0.413 |
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