Expression of 1-1-4.4.4.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.71190.206
27DAP/17DAP0.853680.644
39DAP/27DAP1.226740.672
41DAP/39DAP1.075460.715
42DAP/41DAP0.986791
43DAP/42DAP1.167160.933
47DAP/43DAP0.90560.671
52DAP/47DAP1.049050.875
57DAP/52DAP1.074120.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.236290.02
17DAP/reference1.018030.74
27DAP/reference1.239190.016
39DAP/reference1.015880.828
41DAP/reference1.165720.221
42DAP/reference1.22030.108
43DAP/reference1.11722
47DAP/reference1.221970.207
52DAP/reference0.882310.183
57DAP/reference0.5874

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.790760.158
27DAP/17DAP1.507610.045
39DAP/27DAP1.054640.854
41DAP/39DAP0.708710.046
42DAP/41DAP1.078531
43DAP/42DAP1.599660.017
47DAP/43DAP0.82810.086
52DAP/47DAP0.935540.739
57DAP/52DAP0.691090.059
57DAP/7DAP0.838711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.113880.28
17DAP/reference0.86220.094
27DAP/reference0.715830.01
39DAP/reference0.845530.073
41DAP/reference0.753690.029
42DAP/reference0.699690.02
43DAP/reference0.602720.011
47DAP/reference0.890590.383
52DAP/reference0.531370.01
57DAP/reference0.488450.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.22250.443
17DAP/reference0.890880.095
27DAP/reference1.014291
39DAP/reference0.910840.227
41DAP/reference1.009250.615
42DAP/reference0.94620.261
43DAP/reference0.78460.125
47DAP/reference1.186450.087
52DAP/reference0.856610.021
57DAP/reference0.96370.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.391760.037
17DAP/reference1.101870.924
27DAP/reference1.042610.834
39DAP/reference0.983710.591
41DAP/reference0.769310.055
42DAP/reference0.702170.036
43DAP/reference0.772710.095
47DAP/reference0.908070.174
52DAP/reference0.876810.277
57DAP/reference0.86610.082

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.294530.966
26DAP/20DAP1.763690.098
34DAP/26DAP0.808720.21
51DAP/34DAP0.704430.049
52DAP/51DAP1.481860.246
53DAP/52DAP1.06340.797
55DAP/53DAP0.953410.735
57DAP/55DAP1.012851
62DAP/57DAP1.695920.011
68DAP/62DAP0.930050.722
68DAP/14DAP1.495210.249

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.907810.025

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.341520.02
Immature Eggplant/Mature Eggplant4.369160.05
Ripe Pepper/Ripe Tomato0.49290.224
Mature Eggplant/Ripe Tomato3.261370.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.172260.432
1-1-2/M821.097561
12-2/M820.81752
12-4/M821.12017
1-3/M82N/AN/A
2-1-1/M821.6409
2-1/M820.71068
2-6/M821.065760.452
3-2/M821.50867
4-1-1/M821.755280.968
4-1/M82N/AN/A
4-3-2/M821.7121
4-3/M821.93734
5-3/M821.14433
6-2/M822.66758
6-3/M82N/AN/A
7-1/M820.706470.452
7-2/M82N/AN/A
9-3-2/M821.77486

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.932810.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.66628
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.084120.785
IL1-4/WTpooled0.9124
WT/WTpooled0.7805

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.353640.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.949651
DC3000/delta hrp 6h0.928630.95
DC3000/delta hrp 12h0.690991
DC3000/delta hrp 24h3.137650.05

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.055550.598
DC3000 delta B/DC3000 delta AB0.870350.195

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.972481
Exp 36h1.122571
Exp 60h1.445370.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02111
Var 0h1.015591
Var 12h I row2-row10.821370.627
Var 12h NI row2-row10.95210.906
Var 36h I row2-row11.064811
Var 36h NI row2-row10.952840.743
Var 60h I row2-row10.708150.293
Var 60h NI row2-row11.115720.904
Time course 0hI-0hNI0.933260.609
Time course 12hI-12hNI1.046870.836
Time course 36hI-36hNI1.109780.453
Time course 60hI-60hNI2.413620.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.968540.662
transgenic ySAMdc/azygous control (breaker)1.15111
transgenic ySAMdc/azygous control (red)1.12260.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.173320.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.045631

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.669740.084
Manapal/WT (break)0.849181
Manapal/WT (red)1.245130.413