Tomato Functional Genomics Database (TFGD)

Expression of 1-1-4.4.4.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.03047	0.997
27DAP/17DAP	1.04398	0.927
39DAP/27DAP	0.79182	0.449
41DAP/39DAP	2.22279	0.21
42DAP/41DAP	1.07994	0.997
43DAP/42DAP	1.17774	0.831
47DAP/43DAP	1.05002	0.618
52DAP/47DAP	1.31633	0.445
57DAP/52DAP	1.02124	0.993

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99179	0.693
17DAP/reference	1.08998	0.033
27DAP/reference	1.06296	0.314
39DAP/reference	1.08001	0.106
41DAP/reference	1.02021	0.587
42DAP/reference	0.93688	0.081
43DAP/reference	1.00845	0.957
47DAP/reference	0.94281	0.106
52DAP/reference	0.92998	0.36
57DAP/reference	0.84116	0.091

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.93259	0.509
27DAP/17DAP	0.98271	0.919
39DAP/27DAP	1.04927	0.707
41DAP/39DAP	0.95669	0.893
42DAP/41DAP	1.02624	1
43DAP/42DAP	1.1154	0.162
47DAP/43DAP	1.06363	0.724
52DAP/47DAP	1.01944	0.979
57DAP/52DAP	0.90852	0.426
57DAP/7DAP	1.18392	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.91496	0.246
17DAP/reference	0.93281	0.22
27DAP/reference	0.88262	0.109
39DAP/reference	0.95397	0.307
41DAP/reference	0.86614	0.032
42DAP/reference	1.07973	1
43DAP/reference	0.77767	0.023
47DAP/reference	0.84304	0.128
52DAP/reference	0.98694	0.571
57DAP/reference	1.20687	0.698

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98658	0.77
17DAP/reference	1.00768	1
27DAP/reference	0.86918	0.173
39DAP/reference	0.8561	0.221
41DAP/reference	0.88861	0.199
42DAP/reference	0.79327	0.046
43DAP/reference	1.14862	0.331
47DAP/reference	0.93348	0.092
52DAP/reference	0.98216	0.537
57DAP/reference	1.20149	0.146

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00428	0.75
17DAP/reference	1.01569	0.839
27DAP/reference	0.95877	0.442
39DAP/reference	0.96518	0.464
41DAP/reference	0.87942	0.237
42DAP/reference	0.8276	0.172
43DAP/reference	0.95716	0.432
47DAP/reference	0.91316	0.269
52DAP/reference	0.91562	0.342
57DAP/reference	0.52247	0.017

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.01604	1
26DAP/20DAP	0.84209	0.512
34DAP/26DAP	0.88049	0.584
51DAP/34DAP	1.12198	0.314
52DAP/51DAP	1.12811	0.101
53DAP/52DAP	1.01707	1
55DAP/53DAP	1.09704	0.719
57DAP/55DAP	0.98088	0.888
62DAP/57DAP	1.09076	0.622
68DAP/62DAP	1.05575	0.89
68DAP/14DAP	0.83691	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.70296	0.043

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.72624	0.182
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.98655
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.94612	0.944
1-1-2/M82	0.88862	1
12-2/M82	0.99637
12-4/M82	0.92126	1
1-3/M82	0.76711	0.378
2-1-1/M82	1.05206
2-1/M82	N/A	N/A
2-6/M82	1.28538	0.329
3-2/M82	0.98804
4-1-1/M82	1.01673	1
4-1/M82	N/A	N/A
4-3-2/M82	0.92241	1
4-3/M82	0.62762
5-3/M82	0.94552	1
6-2/M82	1.02728
6-3/M82	0.95629
7-1/M82	N/A	N/A
7-2/M82	1.03266	1
9-3-2/M82	0.98875	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	0.97741	1
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	0.95046

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.8272	0.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.06099	0.894
DC3000/delta hrp 6h	1.69311	1
DC3000/delta hrp 12h	1.14143	1
DC3000/delta hrp 24h	1.04481	0.595

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.92138	0.841
DC3000 delta B/DC3000 delta AB	0.9725	0.766

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.01488
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.98827	0.662
transgenic ySAMdc/azygous control (breaker)	0.92764	0.49
transgenic ySAMdc/azygous control (red)	0.95421	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.94948	0.242

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.01519	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.05403	1
Manapal/WT (break)	0.84919	0.333
Manapal/WT (red)	1.05593	1