Expression of 1-1-4.4.5.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95703 | 0.728 |
27DAP/17DAP | 1.18041 | 0.793 |
39DAP/27DAP | 0.87087 | 0.482 |
41DAP/39DAP | 1.33346 | 0.202 |
42DAP/41DAP | 1.02883 | 1 |
43DAP/42DAP | 1.00515 | 1 |
47DAP/43DAP | 0.98872 | 0.926 |
52DAP/47DAP | 1.31046 | 0.48 |
57DAP/52DAP | 0.96923 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05499 | 0.814 |
17DAP/reference | 1.25281 | 0.143 |
27DAP/reference | 1.09464 | 0.559 |
39DAP/reference | 1.01835 | 0.903 |
41DAP/reference | 1.21938 | 0.102 |
42DAP/reference | 1.06485 | 0.869 |
43DAP/reference | 1.04977 | 0.445 |
47DAP/reference | 1.21767 | 0.069 |
52DAP/reference | 0.97033 | 0.475 |
57DAP/reference | 0.77823 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00915 | 1 |
27DAP/17DAP | 1.04204 | 0.909 |
39DAP/27DAP | 1.11536 | 0.343 |
41DAP/39DAP | 0.99042 | 1 |
42DAP/41DAP | 1.03498 | 0.879 |
43DAP/42DAP | 1.03632 | 0.627 |
47DAP/43DAP | 1.01788 | 0.92 |
52DAP/47DAP | 1.0174 | 0.956 |
57DAP/52DAP | 0.95639 | 0.555 |
57DAP/7DAP | 1.19252 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.15544 | 0.024 |
17DAP/reference | 1.8083 | 0.006 |
27DAP/reference | 1.31964 | 0.026 |
39DAP/reference | 1.38684 | 0.023 |
41DAP/reference | 1.29129 | 0.043 |
42DAP/reference | 1.70078 | 0.007 |
43DAP/reference | 2.03713 | 0.006 |
47DAP/reference | 1.33054 | 0.124 |
52DAP/reference | 1.87564 | 0.007 |
57DAP/reference | 1.38935 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25195 | 0.36 |
17DAP/reference | 1.27483 | 0.543 |
27DAP/reference | 1.33751 | 0.182 |
39DAP/reference | 1.20364 | 0.324 |
41DAP/reference | 1.32711 | 0.07 |
42DAP/reference | 1.23514 | 0.144 |
43DAP/reference | 1.07871 | 0.633 |
47DAP/reference | 1.12624 | 0.089 |
52DAP/reference | 1.21539 | 0.223 |
57DAP/reference | 1.5726 | 0.019 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.69155 | 0.033 |
17DAP/reference | 1.48401 | 0.129 |
27DAP/reference | 2.41361 | 0.012 |
39DAP/reference | 2.42199 | 0.022 |
41DAP/reference | 1.86079 | 0.009 |
42DAP/reference | 1.74965 | 0.014 |
43DAP/reference | 1.54132 | 0.045 |
47DAP/reference | 1.57768 | 0.015 |
52DAP/reference | 1.7013 | 0.05 |
57DAP/reference | 1.08453 | 0.693 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23164 | 0.362 |
26DAP/20DAP | 0.94258 | 1 |
34DAP/26DAP | 0.9136 | 0.322 |
51DAP/34DAP | 1.02529 | 0.936 |
52DAP/51DAP | 1.06142 | 0.404 |
53DAP/52DAP | 0.98767 | 0.909 |
55DAP/53DAP | 0.98804 | 0.807 |
57DAP/55DAP | 1.0623 | 0.935 |
62DAP/57DAP | 0.69435 | 0.162 |
68DAP/62DAP | 1.10839 | 0.834 |
68DAP/14DAP | 0.76877 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93261 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.51857 | |
Mature Green Tomato/Ripe Tomato | 0.96344 | 0.611 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.6858 | |
Mature Eggplant/Ripe Tomato | 0.70969 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.8403 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.96332 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.98312 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.12665 | 1 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.81237 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.94782 | 0.247 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.8899 | |
IL7-3/WTpooled | 1.22337 | |
IL12-4/WTpooled | 0.70834 | |
IL1-4/WTpooled | 1.036 | |
WT/WTpooled | 1.03152 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21106 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98713 | 1 |
DC3000/delta hrp 6h | 1.10181 | 1 |
DC3000/delta hrp 12h | 1.28038 | 1 |
DC3000/delta hrp 24h | 3.36702 | 0.022 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07129 | 0.408 |
DC3000 delta B/DC3000 delta AB | 0.96094 | 0.575 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97356 | 1 |
Exp 36h | 0.86577 | 0.699 |
Exp 60h | 0.924 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03983 | 1 |
Var 0h | 1.023 | 1 |
Var 12h I row2-row1 | 1.01943 | 0.654 |
Var 12h NI row2-row1 | 1.04501 | 1 |
Var 36h I row2-row1 | 1.06255 | 0.908 |
Var 36h NI row2-row1 | 1.05457 | 1 |
Var 60h I row2-row1 | 1.34663 | 1 |
Var 60h NI row2-row1 | 1.1375 | 0.793 |
Time course 0hI-0hNI | 0.98906 | 1 |
Time course 12hI-12hNI | 1.02953 | 0.741 |
Time course 36hI-36hNI | 0.88728 | 0.024 |
Time course 60hI-60hNI | 0.61288 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09366 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.88731 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.0225 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92284 | 0.078 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.7584 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.56226 | 0.083 |
Manapal/WT (break) | 1.20557 | 0.183 |
Manapal/WT (red) | 1.33983 | 0.413 |
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