Expression of 1-1-4.4.5.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.957030.728
27DAP/17DAP1.180410.793
39DAP/27DAP0.870870.482
41DAP/39DAP1.333460.202
42DAP/41DAP1.028831
43DAP/42DAP1.005151
47DAP/43DAP0.988720.926
52DAP/47DAP1.310460.48
57DAP/52DAP0.969230.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.054990.814
17DAP/reference1.252810.143
27DAP/reference1.094640.559
39DAP/reference1.018350.903
41DAP/reference1.219380.102
42DAP/reference1.064850.869
43DAP/reference1.049770.445
47DAP/reference1.217670.069
52DAP/reference0.970330.475
57DAP/reference0.778230.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009151
27DAP/17DAP1.042040.909
39DAP/27DAP1.115360.343
41DAP/39DAP0.990421
42DAP/41DAP1.034980.879
43DAP/42DAP1.036320.627
47DAP/43DAP1.017880.92
52DAP/47DAP1.01740.956
57DAP/52DAP0.956390.555
57DAP/7DAP1.192521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.155440.024
17DAP/reference1.80830.006
27DAP/reference1.319640.026
39DAP/reference1.386840.023
41DAP/reference1.291290.043
42DAP/reference1.700780.007
43DAP/reference2.037130.006
47DAP/reference1.330540.124
52DAP/reference1.875640.007
57DAP/reference1.389350.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.251950.36
17DAP/reference1.274830.543
27DAP/reference1.337510.182
39DAP/reference1.203640.324
41DAP/reference1.327110.07
42DAP/reference1.235140.144
43DAP/reference1.078710.633
47DAP/reference1.126240.089
52DAP/reference1.215390.223
57DAP/reference1.57260.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.691550.033
17DAP/reference1.484010.129
27DAP/reference2.413610.012
39DAP/reference2.421990.022
41DAP/reference1.860790.009
42DAP/reference1.749650.014
43DAP/reference1.541320.045
47DAP/reference1.577680.015
52DAP/reference1.70130.05
57DAP/reference1.084530.693

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.231640.362
26DAP/20DAP0.942581
34DAP/26DAP0.91360.322
51DAP/34DAP1.025290.936
52DAP/51DAP1.061420.404
53DAP/52DAP0.987670.909
55DAP/53DAP0.988040.807
57DAP/55DAP1.06230.935
62DAP/57DAP0.694350.162
68DAP/62DAP1.108390.834
68DAP/14DAP0.768771

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.932610.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.51857
Mature Green Tomato/Ripe Tomato0.963440.611
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.6858
Mature Eggplant/Ripe Tomato0.709691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.8403
12-2/M82N/AN/A
12-4/M820.96332
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.983121
4-1-1/M82N/AN/A
4-1/M821.126651
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.812370.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.947820.247
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.8899
IL7-3/WTpooled1.22337
IL12-4/WTpooled0.70834
IL1-4/WTpooled1.036
WT/WTpooled1.03152

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.211060.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.987131
DC3000/delta hrp 6h1.101811
DC3000/delta hrp 12h1.280381
DC3000/delta hrp 24h3.367020.022

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.071290.408
DC3000 delta B/DC3000 delta AB0.960940.575

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.973561
Exp 36h0.865770.699
Exp 60h0.9240.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.039831
Var 0h1.0231
Var 12h I row2-row11.019430.654
Var 12h NI row2-row11.045011
Var 36h I row2-row11.062550.908
Var 36h NI row2-row11.054571
Var 60h I row2-row11.346631
Var 60h NI row2-row11.13750.793
Time course 0hI-0hNI0.989061
Time course 12hI-12hNI1.029530.741
Time course 36hI-36hNI0.887280.024
Time course 60hI-60hNI0.612880.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.093660.798
transgenic ySAMdc/azygous control (breaker)0.887310.49
transgenic ySAMdc/azygous control (red)1.02250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.922840.078

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.75840.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.562260.083
Manapal/WT (break)1.205570.183
Manapal/WT (red)1.339830.413