Expression of 1-1-4.4.6.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6909 | 0.073 |
27DAP/17DAP | 1.15982 | 0.845 |
39DAP/27DAP | 0.96691 | 0.733 |
41DAP/39DAP | 1.03518 | 0.883 |
42DAP/41DAP | 0.71467 | 0.774 |
43DAP/42DAP | 1.2566 | 1 |
47DAP/43DAP | 0.73192 | 0.251 |
52DAP/47DAP | 1.05989 | 0.854 |
57DAP/52DAP | 0.80691 | 0.673 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90101 | 0.2 |
17DAP/reference | 1.09362 | 0.089 |
27DAP/reference | 1.0252 | 0.981 |
39DAP/reference | 0.90096 | 0.342 |
41DAP/reference | 0.97365 | 0.434 |
42DAP/reference | 0.86881 | 0.007 |
43DAP/reference | 1.0368 | 0.617 |
47DAP/reference | 0.88586 | 0.008 |
52DAP/reference | 0.88593 | 0.102 |
57DAP/reference | 0.93698 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18747 | 0.525 |
27DAP/17DAP | 1.21459 | 0.37 |
39DAP/27DAP | 1.25059 | 0.514 |
41DAP/39DAP | 0.98635 | 1 |
42DAP/41DAP | 1.15421 | 0.316 |
43DAP/42DAP | 0.74894 | 0.029 |
47DAP/43DAP | 1.07742 | 0.889 |
52DAP/47DAP | 0.99915 | 0.982 |
57DAP/52DAP | 0.90831 | 0.612 |
57DAP/7DAP | 1.32196 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87396 | 0.224 |
17DAP/reference | 1.23987 | 0.822 |
27DAP/reference | 1.28321 | 0.246 |
39DAP/reference | 1.08006 | 0.333 |
41DAP/reference | 1.03206 | 0.918 |
42DAP/reference | 1.12696 | 0.233 |
43DAP/reference | 0.89116 | 0.126 |
47DAP/reference | 1.03125 | 1 |
52DAP/reference | 1.17672 | 0.043 |
57DAP/reference | 1.29434 | 0.288 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11465 | 0.226 |
17DAP/reference | 0.96528 | 0.487 |
27DAP/reference | 0.88362 | 0.111 |
39DAP/reference | 0.88743 | 0.095 |
41DAP/reference | 0.8577 | 0.016 |
42DAP/reference | 0.78575 | 0.012 |
43DAP/reference | 0.88061 | 0.102 |
47DAP/reference | 0.86456 | 0.055 |
52DAP/reference | 1.06678 | 0.322 |
57DAP/reference | 1.0696 | 0.345 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08871 | 0.244 |
17DAP/reference | 0.91264 | 0.364 |
27DAP/reference | 1.29385 | 0.51 |
39DAP/reference | 1.07328 | 0.451 |
41DAP/reference | 1.46847 | 0.045 |
42DAP/reference | 1.14611 | 0.818 |
43DAP/reference | 1.31338 | 0.314 |
47DAP/reference | 0.98903 | 0.558 |
52DAP/reference | 1.17546 | 0.517 |
57DAP/reference | 0.93616 | 0.353 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12488 | 0.966 |
26DAP/20DAP | 0.81549 | 0.317 |
34DAP/26DAP | 0.80203 | 0.329 |
51DAP/34DAP | 1.01197 | 0.883 |
52DAP/51DAP | 0.68111 | 0.151 |
53DAP/52DAP | 1.08815 | 0.961 |
55DAP/53DAP | 0.96533 | 0.784 |
57DAP/55DAP | 0.9894 | 0.911 |
62DAP/57DAP | 1.09984 | 0.678 |
68DAP/62DAP | 1.30938 | 0.491 |
68DAP/14DAP | 1.14836 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85308 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 3.87095 | 0.018 |
Immature Eggplant/Mature Eggplant | 4.10622 | 0.165 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0259 | |
IL2-6/WTpooled | 1.01788 | |
IL7-5/WTpooled | 1.01595 | 1 |
IL7-3/WTpooled | 1.106 | |
IL12-4/WTpooled | 0.80581 | 0.543 |
IL1-4/WTpooled | 1.08489 | 1 |
WT/WTpooled | 0.83829 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.39691 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86659 | 0.502 |
DC3000/delta hrp 6h | 1.37423 | 0.777 |
DC3000/delta hrp 12h | 1.09246 | 1 |
DC3000/delta hrp 24h | 0.76847 | 0.067 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.45331 | |
DC3000 delta B/DC3000 delta AB | 0.16444 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87226 | 1 |
Exp 36h | 1.02416 | 0.943 |
Exp 60h | 1.21439 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01696 | 1 |
Var 0h | 1.06483 | 0.98 |
Var 12h I row2-row1 | 0.92522 | 0.467 |
Var 12h NI row2-row1 | 1.10654 | 1 |
Var 36h I row2-row1 | 0.68715 | 0.805 |
Var 36h NI row2-row1 | 2.07327 | 1 |
Var 60h I row2-row1 | 0.99405 | 1 |
Var 60h NI row2-row1 | 1.28093 | 0.904 |
Time course 0hI-0hNI | 0.97695 | 0.873 |
Time course 12hI-12hNI | 1.01067 | 0.861 |
Time course 36hI-36hNI | 0.89269 | 0.112 |
Time course 60hI-60hNI | 0.30329 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94667 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.1269 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.96441 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04048 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01128 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92405 | 1 |
Manapal/WT (break) | 1.19194 | 1 |
Manapal/WT (red) | 2.34661 | 0.133 |
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