Expression of 1-1-4.4.6.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.504340.315
27DAP/17DAP1.611360.62
39DAP/27DAP1.129521
41DAP/39DAP1.05530.985
42DAP/41DAP0.976711
43DAP/42DAP1.132041
47DAP/43DAP0.529370.074
52DAP/47DAP1.081510.946
57DAP/52DAP0.650630.643

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.475810.007
17DAP/reference1.347660.014
27DAP/reference1.298420.055
39DAP/reference1.633390.114
41DAP/reference1.260570.016
42DAP/reference1.406210.001
43DAP/reference1.105540.471
47DAP/reference1.396870.001
52DAP/reference1.634980.015
57DAP/reference1.305880.045

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.567440.336
27DAP/17DAP0.4614
39DAP/27DAP1.009921
41DAP/39DAPN/AN/A
42DAP/41DAP0.714010.077
43DAP/42DAP0.92164
47DAP/43DAP2.934860.5
52DAP/47DAP1.547320.46
57DAP/52DAP0.75690.321
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.39442
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference1.07491
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/reference0.930860.671
52DAP/reference1.67323
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.164470.443
17DAP/reference1.26330.11
27DAP/reference1.187010.066
39DAP/reference1.133340.389
41DAP/reference1.24250.293
42DAP/reference1.092970.61
43DAP/reference1.451690.251
47DAP/reference1.059040.282
52DAP/reference1.280090.156
57DAP/reference1.315590.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.58250.391
17DAP/reference0.783730.224
27DAP/reference1.43545
39DAP/reference0.953940.755
41DAP/reference1.431410.754
42DAP/referenceN/AN/A
43DAP/reference1.171010.565
47DAP/reference1.001180.731
52DAP/reference1.859750.393
57DAP/reference0.903720.516

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.241920.966
26DAP/20DAP0.71044
34DAP/26DAPN/AN/A
51DAP/34DAP0.870490.743
52DAP/51DAP1.057970.842
53DAP/52DAP1.765770.58
55DAP/53DAPN/AN/A
57DAP/55DAPN/AN/A
62DAP/57DAP0.31169
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.28626

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled3.085460.212
IL2-6/WTpooled0.175010.348
IL7-5/WTpooled0.347141
IL7-3/WTpooled3.890070.362
IL12-4/WTpooled3.643040.516
IL1-4/WTpooled0.797890.699
WT/WTpooled1.070381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03031
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.468230.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.1090.421
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A