Expression of 1-1-4.4.6.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.50434 | 0.315 |
27DAP/17DAP | 1.61136 | 0.62 |
39DAP/27DAP | 1.12952 | 1 |
41DAP/39DAP | 1.0553 | 0.985 |
42DAP/41DAP | 0.97671 | 1 |
43DAP/42DAP | 1.13204 | 1 |
47DAP/43DAP | 0.52937 | 0.074 |
52DAP/47DAP | 1.08151 | 0.946 |
57DAP/52DAP | 0.65063 | 0.643 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47581 | 0.007 |
17DAP/reference | 1.34766 | 0.014 |
27DAP/reference | 1.29842 | 0.055 |
39DAP/reference | 1.63339 | 0.114 |
41DAP/reference | 1.26057 | 0.016 |
42DAP/reference | 1.40621 | 0.001 |
43DAP/reference | 1.10554 | 0.471 |
47DAP/reference | 1.39687 | 0.001 |
52DAP/reference | 1.63498 | 0.015 |
57DAP/reference | 1.30588 | 0.045 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.56744 | 0.336 |
27DAP/17DAP | 0.4614 | |
39DAP/27DAP | 1.00992 | 1 |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 0.71401 | 0.077 |
43DAP/42DAP | 0.92164 | |
47DAP/43DAP | 2.93486 | 0.5 |
52DAP/47DAP | 1.54732 | 0.46 |
57DAP/52DAP | 0.7569 | 0.321 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39442 | |
17DAP/reference | N/A | N/A |
27DAP/reference | N/A | N/A |
39DAP/reference | 1.0749 | 1 |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.93086 | 0.671 |
52DAP/reference | 1.67323 | |
57DAP/reference | N/A | N/A |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16447 | 0.443 |
17DAP/reference | 1.2633 | 0.11 |
27DAP/reference | 1.18701 | 0.066 |
39DAP/reference | 1.13334 | 0.389 |
41DAP/reference | 1.2425 | 0.293 |
42DAP/reference | 1.09297 | 0.61 |
43DAP/reference | 1.45169 | 0.251 |
47DAP/reference | 1.05904 | 0.282 |
52DAP/reference | 1.28009 | 0.156 |
57DAP/reference | 1.31559 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.5825 | 0.391 |
17DAP/reference | 0.78373 | 0.224 |
27DAP/reference | 1.43545 | |
39DAP/reference | 0.95394 | 0.755 |
41DAP/reference | 1.43141 | 0.754 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.17101 | 0.565 |
47DAP/reference | 1.00118 | 0.731 |
52DAP/reference | 1.85975 | 0.393 |
57DAP/reference | 0.90372 | 0.516 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.24192 | 0.966 |
26DAP/20DAP | 0.71044 | |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | 0.87049 | 0.743 |
52DAP/51DAP | 1.05797 | 0.842 |
53DAP/52DAP | 1.76577 | 0.58 |
55DAP/53DAP | N/A | N/A |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 0.31169 | |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.28626 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 3.08546 | 0.212 |
IL2-6/WTpooled | 0.17501 | 0.348 |
IL7-5/WTpooled | 0.34714 | 1 |
IL7-3/WTpooled | 3.89007 | 0.362 |
IL12-4/WTpooled | 3.64304 | 0.516 |
IL1-4/WTpooled | 0.79789 | 0.699 |
WT/WTpooled | 1.07038 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0303 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 0.46823 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.109 | 0.421 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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