Expression of 1-1-4.4.6.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.163740.904
27DAP/17DAP1.30850.712
39DAP/27DAP1.431240.132
41DAP/39DAP1.409960.357
42DAP/41DAP1.791560.074
43DAP/42DAP0.969350.912
47DAP/43DAP1.447890.306
52DAP/47DAP0.811470.517
57DAP/52DAP1.218140.95

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.089160.006
17DAP/reference1.219630.193
27DAP/reference0.927970.304
39DAP/reference0.882580.066
41DAP/reference0.930820.201
42DAP/reference1.003370.645
43DAP/reference0.925820.273
47DAP/reference0.714220.001
52DAP/reference0.735840.048
57DAP/reference0.863910.04

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.252430.091
27DAP/17DAP0.941530.58
39DAP/27DAP1.779470.039
41DAP/39DAP0.469150.013
42DAP/41DAP1.712590.002
43DAP/42DAP1.929660.014
47DAP/43DAP0.961840.843
52DAP/47DAP0.732680.105
57DAP/52DAP0.799450.232
57DAP/7DAP1.42910.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.97610.024
17DAP/reference1.646290.022
27DAP/reference1.48850.018
39DAP/reference1.116830.436
41DAP/reference1.599940.01
42DAP/reference1.469080.012
43DAP/reference1.584930.006
47DAP/reference1.458110.083
52DAP/reference1.603480.012
57DAP/reference1.064890.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.898820.038
17DAP/reference1.737220.007
27DAP/reference1.631870.029
39DAP/reference1.428070.02
41DAP/reference1.421590.007
42DAP/reference1.509920.007
43DAP/reference0.9120.298
47DAP/reference0.988450.574
52DAP/reference0.919770.259
57DAP/reference0.834150.043

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.875390.015
17DAP/reference1.382060.146
27DAP/reference1.388590.061
39DAP/reference1.436890.211
41DAP/reference1.071010.754
42DAP/reference1.015461
43DAP/reference1.064370.688
47DAP/reference0.569790.004
52DAP/reference0.970310.675
57DAP/reference0.884140.136

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.253210.966
26DAP/20DAP0.726160.228
34DAP/26DAP1.105881
51DAP/34DAP1.242050.303
52DAP/51DAP0.856681
53DAP/52DAP1.139280.697
55DAP/53DAP1.091110.634
57DAP/55DAP1.029570.935
62DAP/57DAP1.52016
68DAP/62DAP0.948540.769
68DAP/14DAP1.77510.045

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.263320.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.203820.058
Mature Green Tomato/Ripe Tomato0.826670.347
Immature Eggplant/Mature Eggplant0.617940.07
Ripe Pepper/Ripe Tomato1.031371
Mature Eggplant/Ripe Tomato0.936721

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.822680.877
1-1-2/M821.1921
12-2/M821.160251
12-4/M820.728
1-3/M822.6079
2-1-1/M821.079781
2-1/M820.92392
2-6/M821.356580.329
3-2/M821.522170.967
4-1-1/M821.136951
4-1/M820.78665
4-3-2/M821.03024
4-3/M821.360671
5-3/M820.814620.369
6-2/M820.25227
6-3/M821.359981
7-1/M820.95931
7-2/M821.45562
9-3-2/M821.428511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.902720.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.080111
IL12-4/WTpooled0.922220.581
IL1-4/WTpooled0.89699
WT/WTpooled0.927771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.40345

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.97131
DC3000/delta hrp 6h0.694210.801
DC3000/delta hrp 12h0.923611
DC3000/delta hrp 24h1.648630.051

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.930361
Exp 36h1.088541
Exp 60h0.790540.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.07831
Var 0h0.991931
Var 12h I row2-row11.076420.654
Var 12h NI row2-row10.948240.82
Var 36h I row2-row11.144681
Var 36h NI row2-row10.692940.645
Var 60h I row2-row10.788840.374
Var 60h NI row2-row11.065231
Time course 0hI-0hNI1.023830.867
Time course 12hI-12hNI0.849740.892
Time course 36hI-36hNI1.024190.58
Time course 60hI-60hNI1.42310.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.11450.482
transgenic ySAMdc/azygous control (breaker)0.651980.137
transgenic ySAMdc/azygous control (red)0.905331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.888420.196

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.155430.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.10370.14
Manapal/WT (break)0.653830.333
Manapal/WT (red)1.284570.413