Expression of 1-1-4.4.6.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14911 | 0.927 |
27DAP/17DAP | 1.22978 | 1 |
39DAP/27DAP | 2.30796 | 0.028 |
41DAP/39DAP | 2.40687 | 0.612 |
42DAP/41DAP | 1.86037 | 0.203 |
43DAP/42DAP | 1.11286 | 0.933 |
47DAP/43DAP | 1.10158 | 0.687 |
52DAP/47DAP | 1.29352 | 0.665 |
57DAP/52DAP | 0.86028 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56353 | 0.008 |
17DAP/reference | 1.13555 | 0.086 |
27DAP/reference | 1.23319 | 0.093 |
39DAP/reference | 1.07943 | 0.027 |
41DAP/reference | 1.41351 | 0.02 |
42DAP/reference | 1.26677 | 0.007 |
43DAP/reference | 1.09188 | |
47DAP/reference | 1.40441 | 0.006 |
52DAP/reference | 1.15681 | 0.019 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35403 | 1 |
27DAP/17DAP | 0.69539 | 0.105 |
39DAP/27DAP | 1.03044 | |
41DAP/39DAP | 1.11398 | |
42DAP/41DAP | 2.38972 | 0.011 |
43DAP/42DAP | 1.23197 | |
47DAP/43DAP | 1.99239 | |
52DAP/47DAP | 1.51019 | 0.414 |
57DAP/52DAP | 1.00256 | 0.869 |
57DAP/7DAP | 0.40418 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.95579 | 0.025 |
17DAP/reference | 1.53598 | 0.008 |
27DAP/reference | 1.47057 | 0.035 |
39DAP/reference | 1.49703 | 0.007 |
41DAP/reference | 1.55738 | 0.011 |
42DAP/reference | 1.30417 | 0.076 |
43DAP/reference | 1.18816 | 0.012 |
47DAP/reference | 1.40679 | 0.056 |
52DAP/reference | 1.48765 | 0.017 |
57DAP/reference | 1.21556 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40563 | |
17DAP/reference | 0.93007 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.76196 | |
41DAP/reference | 1.27714 | |
42DAP/reference | 1.34364 | |
43DAP/reference | 0.83257 | 0.095 |
47DAP/reference | 1.35943 | 0.067 |
52DAP/reference | 1.40292 | 0.038 |
57DAP/reference | 1.14066 | 0.705 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15132 | 0.329 |
17DAP/reference | 1.08785 | 0.767 |
27DAP/reference | 1.15369 | 0.248 |
39DAP/reference | 1.04888 | 0.885 |
41DAP/reference | 0.93485 | 0.371 |
42DAP/reference | 1.02239 | 1 |
43DAP/reference | 1.25267 | 0.068 |
47DAP/reference | 2.83334 | 0.443 |
52DAP/reference | 0.98504 | 0.821 |
57DAP/reference | 0.7197 | 0.036 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.67781 | 0.966 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 2.26614 | |
51DAP/34DAP | 0.88603 | 0.631 |
52DAP/51DAP | 0.97698 | 1 |
53DAP/52DAP | 0.86859 | 0.649 |
55DAP/53DAP | 0.48985 | 0.016 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88414 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.37041 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.54458 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95895 | 1 |
IL2-6/WTpooled | 1.02782 | 1 |
IL7-5/WTpooled | 1.31659 | 0.635 |
IL7-3/WTpooled | 0.81065 | 0.294 |
IL12-4/WTpooled | 1.07583 | 0.553 |
IL1-4/WTpooled | 0.93394 | 0.834 |
WT/WTpooled | 1.02797 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.99862 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9295 | 0.256 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.61355 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.86753 | 0.15 |
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