Expression of 1-1-4.4.6.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.149110.927
27DAP/17DAP1.229781
39DAP/27DAP2.307960.028
41DAP/39DAP2.406870.612
42DAP/41DAP1.860370.203
43DAP/42DAP1.112860.933
47DAP/43DAP1.101580.687
52DAP/47DAP1.293520.665
57DAP/52DAP0.860280.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.563530.008
17DAP/reference1.135550.086
27DAP/reference1.233190.093
39DAP/reference1.079430.027
41DAP/reference1.413510.02
42DAP/reference1.266770.007
43DAP/reference1.09188
47DAP/reference1.404410.006
52DAP/reference1.156810.019
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.354031
27DAP/17DAP0.695390.105
39DAP/27DAP1.03044
41DAP/39DAP1.11398
42DAP/41DAP2.389720.011
43DAP/42DAP1.23197
47DAP/43DAP1.99239
52DAP/47DAP1.510190.414
57DAP/52DAP1.002560.869
57DAP/7DAP0.40418

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.955790.025
17DAP/reference1.535980.008
27DAP/reference1.470570.035
39DAP/reference1.497030.007
41DAP/reference1.557380.011
42DAP/reference1.304170.076
43DAP/reference1.188160.012
47DAP/reference1.406790.056
52DAP/reference1.487650.017
57DAP/reference1.215560.057

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.40563
17DAP/reference0.93007
27DAP/referenceN/AN/A
39DAP/reference0.76196
41DAP/reference1.27714
42DAP/reference1.34364
43DAP/reference0.832570.095
47DAP/reference1.359430.067
52DAP/reference1.402920.038
57DAP/reference1.140660.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.151320.329
17DAP/reference1.087850.767
27DAP/reference1.153690.248
39DAP/reference1.048880.885
41DAP/reference0.934850.371
42DAP/reference1.022391
43DAP/reference1.252670.068
47DAP/reference2.833340.443
52DAP/reference0.985040.821
57DAP/reference0.71970.036

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.677810.966
26DAP/20DAPN/AN/A
34DAP/26DAP2.26614
51DAP/34DAP0.886030.631
52DAP/51DAP0.976981
53DAP/52DAP0.868590.649
55DAP/53DAP0.489850.016
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.884140.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.37041
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.54458
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.958951
IL2-6/WTpooled1.027821
IL7-5/WTpooled1.316590.635
IL7-3/WTpooled0.810650.294
IL12-4/WTpooled1.075830.553
IL1-4/WTpooled0.933940.834
WT/WTpooled1.027971

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.998621
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.92950.256

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.613550.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.867530.15