Expression of 1-1-4.4.6.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0309 | 0.932 |
27DAP/17DAP | 1.0462 | 0.881 |
39DAP/27DAP | 0.8084 | 0.414 |
41DAP/39DAP | 1.33767 | 0.423 |
42DAP/41DAP | 0.959 | 1 |
43DAP/42DAP | 0.93631 | 0.827 |
47DAP/43DAP | 0.99867 | 0.98 |
52DAP/47DAP | 1.00845 | 0.948 |
57DAP/52DAP | 1.00682 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00867 | 1 |
17DAP/reference | 0.98943 | 0.777 |
27DAP/reference | 0.99791 | 0.867 |
39DAP/reference | 1.0286 | 0.615 |
41DAP/reference | 0.95886 | 0.341 |
42DAP/reference | 0.91007 | 0.005 |
43DAP/reference | 1.02061 | 0.646 |
47DAP/reference | 0.89252 | 0.014 |
52DAP/reference | 0.84281 | 0.027 |
57DAP/reference | 0.85632 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96536 | 0.578 |
27DAP/17DAP | 1.01277 | 0.96 |
39DAP/27DAP | 1.00965 | 0.824 |
41DAP/39DAP | 0.98138 | 0.997 |
42DAP/41DAP | 1.03253 | 0.879 |
43DAP/42DAP | 1.0563 | 0.212 |
47DAP/43DAP | 1.00715 | 0.956 |
52DAP/47DAP | 1.00413 | 1 |
57DAP/52DAP | 0.95248 | 0.415 |
57DAP/7DAP | 1.01918 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0759 | 0.393 |
17DAP/reference | 1.04222 | 0.971 |
27DAP/reference | 1.12418 | 0.035 |
39DAP/reference | 1.80832 | 0.006 |
41DAP/reference | 1.16192 | 0.028 |
42DAP/reference | 1.86209 | 0.009 |
43DAP/reference | 2.6831 | 0.006 |
47DAP/reference | 1.70941 | 0.191 |
52DAP/reference | 2.39339 | 0.007 |
57DAP/reference | 1.91863 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11589 | 0.17 |
17DAP/reference | 0.94847 | 0.149 |
27DAP/reference | 0.99285 | 0.663 |
39DAP/reference | 1.00415 | 0.769 |
41DAP/reference | 0.92351 | 0.085 |
42DAP/reference | 0.93589 | 0.15 |
43DAP/reference | 1.05946 | 0.845 |
47DAP/reference | 0.92319 | 0.055 |
52DAP/reference | 1.07156 | 0.24 |
57DAP/reference | 1.14625 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81147 | 0.048 |
17DAP/reference | 1.04623 | 0.631 |
27DAP/reference | 1.07078 | 0.081 |
39DAP/reference | 1.0975 | 0.12 |
41DAP/reference | 1.11011 | 0.086 |
42DAP/reference | 1.09999 | 0.54 |
43DAP/reference | 1.14834 | 0.474 |
47DAP/reference | 0.972 | 0.478 |
52DAP/reference | 0.97103 | 0.663 |
57DAP/reference | 0.70495 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98203 | 1 |
26DAP/20DAP | 0.89939 | 0.317 |
34DAP/26DAP | 1.1294 | 0.819 |
51DAP/34DAP | 1.16185 | 0.095 |
52DAP/51DAP | 0.97827 | 1 |
53DAP/52DAP | 1.01893 | 0.858 |
55DAP/53DAP | 1.00834 | 0.904 |
57DAP/55DAP | 1.15397 | 0.393 |
62DAP/57DAP | 1.066 | 0.678 |
68DAP/62DAP | 1.09132 | 0.821 |
68DAP/14DAP | 1.05541 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96525 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.22405 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.23518 | 0.064 |
Immature Eggplant/Mature Eggplant | 0.96867 | 0.808 |
Ripe Pepper/Ripe Tomato | 1.76282 | 1 |
Mature Eggplant/Ripe Tomato | 3.13108 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94545 | 0.477 |
1-1-2/M82 | 0.76241 | 0.761 |
12-2/M82 | 1.07916 | 1 |
12-4/M82 | 0.94838 | 1 |
1-3/M82 | 0.88432 | 0.501 |
2-1-1/M82 | 1.27423 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98583 | |
3-2/M82 | 0.85764 | 0.451 |
4-1-1/M82 | 0.81646 | 0.847 |
4-1/M82 | 1.01622 | 1 |
4-3-2/M82 | 0.92778 | 0.487 |
4-3/M82 | 0.92043 | 1 |
5-3/M82 | 1.01679 | 1 |
6-2/M82 | 1.10109 | |
6-3/M82 | 0.97534 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.9825 | 1 |
9-3-2/M82 | 0.83191 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.29898 | 0.277 |
IL2-6/WTpooled | 1.63351 | |
IL7-5/WTpooled | 0.85694 | 1 |
IL7-3/WTpooled | 1.12914 | 0.362 |
IL12-4/WTpooled | 0.90124 | 0.71 |
IL1-4/WTpooled | 0.86383 | 0.834 |
WT/WTpooled | 0.98894 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04985 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93935 | 1 |
DC3000/delta hrp 6h | 0.96624 | 0.95 |
DC3000/delta hrp 12h | 1.10818 | 1 |
DC3000/delta hrp 24h | 1.03634 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95287 | 0.955 |
DC3000 delta B/DC3000 delta AB | 1.03983 | 0.535 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98076 | 1 |
Exp 36h | 1.07142 | 1 |
Exp 60h | 1.0363 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97798 | 1 |
Var 0h | 1.01786 | 1 |
Var 12h I row2-row1 | 1.14322 | 0.263 |
Var 12h NI row2-row1 | 1.03563 | 0.649 |
Var 36h I row2-row1 | 0.97974 | 0.575 |
Var 36h NI row2-row1 | 1.14716 | 1 |
Var 60h I row2-row1 | 1.07845 | 1 |
Var 60h NI row2-row1 | 1.09763 | 0.904 |
Time course 0hI-0hNI | 1.02743 | 0.852 |
Time course 12hI-12hNI | 0.98911 | 0.931 |
Time course 36hI-36hNI | 0.98467 | 0.559 |
Time course 60hI-60hNI | 1.00421 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87057 | 0.254 |
transgenic ySAMdc/azygous control (breaker) | 0.79042 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.88408 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99576 | 0.737 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.51889 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.68394 | 0.172 |
Manapal/WT (break) | 0.95261 | 1 |
Manapal/WT (red) | 0.88032 | 0.36 |
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