Expression of 1-1-4.4.6.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.03090.932
27DAP/17DAP1.04620.881
39DAP/27DAP0.80840.414
41DAP/39DAP1.337670.423
42DAP/41DAP0.9591
43DAP/42DAP0.936310.827
47DAP/43DAP0.998670.98
52DAP/47DAP1.008450.948
57DAP/52DAP1.006820.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008671
17DAP/reference0.989430.777
27DAP/reference0.997910.867
39DAP/reference1.02860.615
41DAP/reference0.958860.341
42DAP/reference0.910070.005
43DAP/reference1.020610.646
47DAP/reference0.892520.014
52DAP/reference0.842810.027
57DAP/reference0.856320.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.965360.578
27DAP/17DAP1.012770.96
39DAP/27DAP1.009650.824
41DAP/39DAP0.981380.997
42DAP/41DAP1.032530.879
43DAP/42DAP1.05630.212
47DAP/43DAP1.007150.956
52DAP/47DAP1.004131
57DAP/52DAP0.952480.415
57DAP/7DAP1.019181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.07590.393
17DAP/reference1.042220.971
27DAP/reference1.124180.035
39DAP/reference1.808320.006
41DAP/reference1.161920.028
42DAP/reference1.862090.009
43DAP/reference2.68310.006
47DAP/reference1.709410.191
52DAP/reference2.393390.007
57DAP/reference1.918630.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115890.17
17DAP/reference0.948470.149
27DAP/reference0.992850.663
39DAP/reference1.004150.769
41DAP/reference0.923510.085
42DAP/reference0.935890.15
43DAP/reference1.059460.845
47DAP/reference0.923190.055
52DAP/reference1.071560.24
57DAP/reference1.146250.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.811470.048
17DAP/reference1.046230.631
27DAP/reference1.070780.081
39DAP/reference1.09750.12
41DAP/reference1.110110.086
42DAP/reference1.099990.54
43DAP/reference1.148340.474
47DAP/reference0.9720.478
52DAP/reference0.971030.663
57DAP/reference0.704950.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.982031
26DAP/20DAP0.899390.317
34DAP/26DAP1.12940.819
51DAP/34DAP1.161850.095
52DAP/51DAP0.978271
53DAP/52DAP1.018930.858
55DAP/53DAP1.008340.904
57DAP/55DAP1.153970.393
62DAP/57DAP1.0660.678
68DAP/62DAP1.091320.821
68DAP/14DAP1.055410.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.965250.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.224050.113
Mature Green Tomato/Ripe Tomato1.235180.064
Immature Eggplant/Mature Eggplant0.968670.808
Ripe Pepper/Ripe Tomato1.762821
Mature Eggplant/Ripe Tomato3.131080.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.945450.477
1-1-2/M820.762410.761
12-2/M821.079161
12-4/M820.948381
1-3/M820.884320.501
2-1-1/M821.27423
2-1/M82N/AN/A
2-6/M820.98583
3-2/M820.857640.451
4-1-1/M820.816460.847
4-1/M821.016221
4-3-2/M820.927780.487
4-3/M820.920431
5-3/M821.016791
6-2/M821.10109
6-3/M820.97534
7-1/M82N/AN/A
7-2/M820.98251
9-3-2/M820.831910.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.298980.277
IL2-6/WTpooled1.63351
IL7-5/WTpooled0.856941
IL7-3/WTpooled1.129140.362
IL12-4/WTpooled0.901240.71
IL1-4/WTpooled0.863830.834
WT/WTpooled0.988941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049851

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.939351
DC3000/delta hrp 6h0.966240.95
DC3000/delta hrp 12h1.108181
DC3000/delta hrp 24h1.036340.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.952870.955
DC3000 delta B/DC3000 delta AB1.039830.535

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.980761
Exp 36h1.071421
Exp 60h1.03631

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977981
Var 0h1.017861
Var 12h I row2-row11.143220.263
Var 12h NI row2-row11.035630.649
Var 36h I row2-row10.979740.575
Var 36h NI row2-row11.147161
Var 60h I row2-row11.078451
Var 60h NI row2-row11.097630.904
Time course 0hI-0hNI1.027430.852
Time course 12hI-12hNI0.989110.931
Time course 36hI-36hNI0.984670.559
Time course 60hI-60hNI1.004211

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.870570.254
transgenic ySAMdc/azygous control (breaker)0.790420.251
transgenic ySAMdc/azygous control (red)0.884081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995760.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.518890.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.683940.172
Manapal/WT (break)0.952611
Manapal/WT (red)0.880320.36