Expression of 1-1-4.4.7.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.538980.244
27DAP/17DAP0.976180.963
39DAP/27DAP2.033740.03
41DAP/39DAP0.943490.761
42DAP/41DAP1.273580.894
43DAP/42DAP1.295460.778
47DAP/43DAP1.451270.195
52DAP/47DAP0.84140.554
57DAP/52DAP1.702560.512

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.573630.024
17DAP/reference0.687530.007
27DAP/reference0.701610.013
39DAP/reference1.586640.423
41DAP/reference1.076690.667
42DAP/reference1.657380.002
43DAP/reference1.56660.007
47DAP/reference3.429990.001
52DAP/reference1.565160.023
57DAP/reference1.932810.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.614490.046
27DAP/17DAP1.125140.794
39DAP/27DAP1.392910.079
41DAP/39DAP0.965720.934
42DAP/41DAP0.880430.377
43DAP/42DAP0.793680.105
47DAP/43DAP1.076570.926
52DAP/47DAP1.520930.377
57DAP/52DAP0.870770.532
57DAP/7DAP1.28194

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.601290.05
17DAP/reference0.555690.014
27DAP/reference0.856550.066
39DAP/reference1.077960.601
41DAP/reference1.40630.011
42DAP/reference1.308790.014
43DAP/reference1.132890.364
47DAP/reference1.345380.121
52DAP/reference1.883510.007
57DAP/reference2.943460.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.602970.009
17DAP/reference0.748090.018
27DAP/reference0.89560.249
39DAP/reference0.858360.136
41DAP/reference1.255320.013
42DAP/reference1.254350.027
43DAP/reference1.255570.255
47DAP/reference4.294250.008
52DAP/reference1.385660.006
57DAP/reference1.727590.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.701270.065
17DAP/reference0.797710.224
27DAP/reference1.120410.644
39DAP/reference1.364820.015
41DAP/reference1.232960.074
42DAP/reference1.375130.023
43DAP/reference1.409680.019
47DAP/reference2.345080.005
52DAP/reference2.519470.027
57DAP/reference1.448590.058

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.956081
26DAP/20DAP1.249170.481
34DAP/26DAP1.08312
51DAP/34DAP1.52880.224
52DAP/51DAP0.805571
53DAP/52DAP1.688810.036
55DAP/53DAP0.834670.389
57DAP/55DAP0.7420.202
62DAP/57DAP2.839260.003
68DAP/62DAP0.825010.195
68DAP/14DAP1.967450.179

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.4330.285

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.022230.036
Mature Green Tomato/Ripe Tomato0.554540.021
Immature Eggplant/Mature Eggplant46.35970.05
Ripe Pepper/Ripe Tomato2.038430.258
Mature Eggplant/Ripe Tomato0.377821

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.927880.934
1-1-2/M821.70451
12-2/M821.078741
12-4/M821.105471
1-3/M823.693640.479
2-1-1/M821.037020.457
2-1/M820.938650.74
2-6/M821.347740.374
3-2/M821.033791
4-1-1/M821.830991
4-1/M820.49901
4-3-2/M822.986390.508
4-3/M821.1480.268
5-3/M820.423240.395
6-2/M820.64687
6-3/M820.974551
7-1/M820.91950.803
7-2/M822.72180.385
9-3-2/M821.967520.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.122940.365
IL2-6/WTpooled0.849280.473
IL7-5/WTpooled1.066690.792
IL7-3/WTpooled0.987351
IL12-4/WTpooled0.987581
IL1-4/WTpooled1.021231
WT/WTpooled0.934431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.546010.148

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.9761
DC3000/delta hrp 6h0.987490.95
DC3000/delta hrp 12h0.988071
DC3000/delta hrp 24h1.088820.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.100110.068
DC3000 delta B/DC3000 delta AB1.882220.083

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.053641
Exp 36h1.003471
Exp 60h0.933840.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008751
Var 0h0.979571
Var 12h I row2-row11.020520.795
Var 12h NI row2-row11.464331
Var 36h I row2-row11.103480.489
Var 36h NI row2-row11.098090.276
Var 60h I row2-row10.684610.293
Var 60h NI row2-row10.799110.301
Time course 0hI-0hNI1.050770.852
Time course 12hI-12hNI1.277060.194
Time course 36hI-36hNI2.730510.006
Time course 60hI-60hNI9.165150.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.552660.301
transgenic ySAMdc/azygous control (breaker)0.862150.49
transgenic ySAMdc/azygous control (red)1.063891

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.454990.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.022231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.910530.096
Manapal/WT (break)4.593370.14
Manapal/WT (red)1.649860.137