Expression of 1-1-4.4.7.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.53898 | 0.244 |
27DAP/17DAP | 0.97618 | 0.963 |
39DAP/27DAP | 2.03374 | 0.03 |
41DAP/39DAP | 0.94349 | 0.761 |
42DAP/41DAP | 1.27358 | 0.894 |
43DAP/42DAP | 1.29546 | 0.778 |
47DAP/43DAP | 1.45127 | 0.195 |
52DAP/47DAP | 0.8414 | 0.554 |
57DAP/52DAP | 1.70256 | 0.512 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.57363 | 0.024 |
17DAP/reference | 0.68753 | 0.007 |
27DAP/reference | 0.70161 | 0.013 |
39DAP/reference | 1.58664 | 0.423 |
41DAP/reference | 1.07669 | 0.667 |
42DAP/reference | 1.65738 | 0.002 |
43DAP/reference | 1.5666 | 0.007 |
47DAP/reference | 3.42999 | 0.001 |
52DAP/reference | 1.56516 | 0.023 |
57DAP/reference | 1.93281 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.61449 | 0.046 |
27DAP/17DAP | 1.12514 | 0.794 |
39DAP/27DAP | 1.39291 | 0.079 |
41DAP/39DAP | 0.96572 | 0.934 |
42DAP/41DAP | 0.88043 | 0.377 |
43DAP/42DAP | 0.79368 | 0.105 |
47DAP/43DAP | 1.07657 | 0.926 |
52DAP/47DAP | 1.52093 | 0.377 |
57DAP/52DAP | 0.87077 | 0.532 |
57DAP/7DAP | 1.28194 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.60129 | 0.05 |
17DAP/reference | 0.55569 | 0.014 |
27DAP/reference | 0.85655 | 0.066 |
39DAP/reference | 1.07796 | 0.601 |
41DAP/reference | 1.4063 | 0.011 |
42DAP/reference | 1.30879 | 0.014 |
43DAP/reference | 1.13289 | 0.364 |
47DAP/reference | 1.34538 | 0.121 |
52DAP/reference | 1.88351 | 0.007 |
57DAP/reference | 2.94346 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.60297 | 0.009 |
17DAP/reference | 0.74809 | 0.018 |
27DAP/reference | 0.8956 | 0.249 |
39DAP/reference | 0.85836 | 0.136 |
41DAP/reference | 1.25532 | 0.013 |
42DAP/reference | 1.25435 | 0.027 |
43DAP/reference | 1.25557 | 0.255 |
47DAP/reference | 4.29425 | 0.008 |
52DAP/reference | 1.38566 | 0.006 |
57DAP/reference | 1.72759 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.70127 | 0.065 |
17DAP/reference | 0.79771 | 0.224 |
27DAP/reference | 1.12041 | 0.644 |
39DAP/reference | 1.36482 | 0.015 |
41DAP/reference | 1.23296 | 0.074 |
42DAP/reference | 1.37513 | 0.023 |
43DAP/reference | 1.40968 | 0.019 |
47DAP/reference | 2.34508 | 0.005 |
52DAP/reference | 2.51947 | 0.027 |
57DAP/reference | 1.44859 | 0.058 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95608 | 1 |
26DAP/20DAP | 1.24917 | 0.481 |
34DAP/26DAP | 1.08312 | |
51DAP/34DAP | 1.5288 | 0.224 |
52DAP/51DAP | 0.80557 | 1 |
53DAP/52DAP | 1.68881 | 0.036 |
55DAP/53DAP | 0.83467 | 0.389 |
57DAP/55DAP | 0.742 | 0.202 |
62DAP/57DAP | 2.83926 | 0.003 |
68DAP/62DAP | 0.82501 | 0.195 |
68DAP/14DAP | 1.96745 | 0.179 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.433 | 0.285 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.02223 | 0.036 |
Mature Green Tomato/Ripe Tomato | 0.55454 | 0.021 |
Immature Eggplant/Mature Eggplant | 46.3597 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.03843 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.37782 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92788 | 0.934 |
1-1-2/M82 | 1.7045 | 1 |
12-2/M82 | 1.07874 | 1 |
12-4/M82 | 1.10547 | 1 |
1-3/M82 | 3.69364 | 0.479 |
2-1-1/M82 | 1.03702 | 0.457 |
2-1/M82 | 0.93865 | 0.74 |
2-6/M82 | 1.34774 | 0.374 |
3-2/M82 | 1.03379 | 1 |
4-1-1/M82 | 1.83099 | 1 |
4-1/M82 | 0.49901 | |
4-3-2/M82 | 2.98639 | 0.508 |
4-3/M82 | 1.148 | 0.268 |
5-3/M82 | 0.42324 | 0.395 |
6-2/M82 | 0.64687 | |
6-3/M82 | 0.97455 | 1 |
7-1/M82 | 0.9195 | 0.803 |
7-2/M82 | 2.7218 | 0.385 |
9-3-2/M82 | 1.96752 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12294 | 0.365 |
IL2-6/WTpooled | 0.84928 | 0.473 |
IL7-5/WTpooled | 1.06669 | 0.792 |
IL7-3/WTpooled | 0.98735 | 1 |
IL12-4/WTpooled | 0.98758 | 1 |
IL1-4/WTpooled | 1.02123 | 1 |
WT/WTpooled | 0.93443 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.54601 | 0.148 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.976 | 1 |
DC3000/delta hrp 6h | 0.98749 | 0.95 |
DC3000/delta hrp 12h | 0.98807 | 1 |
DC3000/delta hrp 24h | 1.08882 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.10011 | 0.068 |
DC3000 delta B/DC3000 delta AB | 1.88222 | 0.083 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05364 | 1 |
Exp 36h | 1.00347 | 1 |
Exp 60h | 0.93384 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00875 | 1 |
Var 0h | 0.97957 | 1 |
Var 12h I row2-row1 | 1.02052 | 0.795 |
Var 12h NI row2-row1 | 1.46433 | 1 |
Var 36h I row2-row1 | 1.10348 | 0.489 |
Var 36h NI row2-row1 | 1.09809 | 0.276 |
Var 60h I row2-row1 | 0.68461 | 0.293 |
Var 60h NI row2-row1 | 0.79911 | 0.301 |
Time course 0hI-0hNI | 1.05077 | 0.852 |
Time course 12hI-12hNI | 1.27706 | 0.194 |
Time course 36hI-36hNI | 2.73051 | 0.006 |
Time course 60hI-60hNI | 9.16515 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.55266 | 0.301 |
transgenic ySAMdc/azygous control (breaker) | 0.86215 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.06389 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.45499 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02223 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.91053 | 0.096 |
Manapal/WT (break) | 4.59337 | 0.14 |
Manapal/WT (red) | 1.64986 | 0.137 |
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