Expression of 1-1-4.4.7.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97858 | 0.699 |
27DAP/17DAP | 0.92834 | 0.754 |
39DAP/27DAP | 1.97048 | 0.068 |
41DAP/39DAP | 0.84813 | 0.445 |
42DAP/41DAP | 0.50229 | 0.262 |
43DAP/42DAP | 0.84209 | 0.705 |
47DAP/43DAP | 0.77821 | 0.35 |
52DAP/47DAP | 1.14011 | 0.906 |
57DAP/52DAP | 0.91681 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42463 | 0.018 |
17DAP/reference | 0.93512 | 0.448 |
27DAP/reference | 0.73162 | 0.012 |
39DAP/reference | 0.92095 | 0.298 |
41DAP/reference | 0.90723 | 0.267 |
42DAP/reference | 1.02376 | 0.731 |
43DAP/reference | 0.90975 | 0.302 |
47DAP/reference | 0.79381 | 0.004 |
52DAP/reference | 0.55655 | 0.013 |
57DAP/reference | 0.8403 | 0.071 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87015 | 0.299 |
27DAP/17DAP | 0.86984 | 0.279 |
39DAP/27DAP | 1.16661 | 0.492 |
41DAP/39DAP | 1.24514 | 0.59 |
42DAP/41DAP | 0.89392 | 0.451 |
43DAP/42DAP | 0.90847 | 0.336 |
47DAP/43DAP | 1.00657 | 1 |
52DAP/47DAP | 0.80879 | 0.296 |
57DAP/52DAP | 0.91114 | 0.558 |
57DAP/7DAP | 0.63132 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.1507 | 0.024 |
17DAP/reference | 1.07841 | 0.399 |
27DAP/reference | 1.25841 | 0.073 |
39DAP/reference | 1.16584 | 0.081 |
41DAP/reference | 1.1286 | 0.191 |
42DAP/reference | 1.13267 | 0.308 |
43DAP/reference | 1.18191 | 0.024 |
47DAP/reference | 1.37769 | 0.021 |
52DAP/reference | 1.35324 | 0.015 |
57DAP/reference | 1.00451 | 0.775 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32893 | 0.081 |
17DAP/reference | 1.03391 | 0.92 |
27DAP/reference | 1.21463 | 0.153 |
39DAP/reference | 1.13045 | 0.355 |
41DAP/reference | 1.10039 | 0.45 |
42DAP/reference | 1.04001 | 0.583 |
43DAP/reference | 0.86869 | 0.175 |
47DAP/reference | 1.17419 | 0.176 |
52DAP/reference | 0.84694 | 0.055 |
57DAP/reference | 0.92097 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48963 | 0.024 |
17DAP/reference | 0.99963 | 0.855 |
27DAP/reference | 0.95953 | 0.302 |
39DAP/reference | 0.98679 | 0.643 |
41DAP/reference | 0.96544 | 0.56 |
42DAP/reference | 0.91634 | 0.134 |
43DAP/reference | 1.00756 | 0.712 |
47DAP/reference | 0.80721 | 0.048 |
52DAP/reference | 0.7548 | 0.083 |
57DAP/reference | 0.59014 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95277 | 1 |
26DAP/20DAP | 1.09591 | 1 |
34DAP/26DAP | 0.74244 | 0.488 |
51DAP/34DAP | 1.0318 | 0.98 |
52DAP/51DAP | 1.09367 | 0.689 |
53DAP/52DAP | 0.72422 | 0.102 |
55DAP/53DAP | 0.86486 | 0.544 |
57DAP/55DAP | 1.23009 | 0.474 |
62DAP/57DAP | 1.10502 | 0.767 |
68DAP/62DAP | 0.90888 | 0.722 |
68DAP/14DAP | 1.42466 | 0.936 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.47648 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.93406 | 0.635 |
Mature Green Tomato/Ripe Tomato | 1.58656 | 0.053 |
Immature Eggplant/Mature Eggplant | 1.74345 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.28821 | |
Mature Eggplant/Ripe Tomato | 1.0049 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 0.69121 | |
12-4/M82 | 0.79295 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.05641 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.35057 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95512 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.16533 | 1 |
IL7-3/WTpooled | 1.23166 | |
IL12-4/WTpooled | 1.09007 | 0.891 |
IL1-4/WTpooled | 0.96816 | 1 |
WT/WTpooled | 0.95236 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06853 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.83245 | 0.536 |
DC3000/delta hrp 6h | 0.90427 | 0.95 |
DC3000/delta hrp 12h | 1.00233 | 1 |
DC3000/delta hrp 24h | 2.44982 | 0.026 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.23126 | 0.087 |
DC3000 delta B/DC3000 delta AB | 1.81807 | 0.081 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97769 | 1 |
Var 0h | 1.52441 | 0.782 |
Var 12h I row2-row1 | 0.74671 | 0.338 |
Var 12h NI row2-row1 | 1.10999 | 1 |
Var 36h I row2-row1 | 0.91081 | 1 |
Var 36h NI row2-row1 | 0.98238 | 0.791 |
Var 60h I row2-row1 | 0.83612 | 0.292 |
Var 60h NI row2-row1 | 0.84782 | 0.756 |
Time course 0hI-0hNI | 0.9467 | 0.634 |
Time course 12hI-12hNI | 1.0479 | 0.714 |
Time course 36hI-36hNI | 1.47556 | 0.005 |
Time course 60hI-60hNI | 3.77874 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91198 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.65395 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.80474 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.19485 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.65663 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.81239 | 1 |
Manapal/WT (break) | 0.79681 | 0.333 |
Manapal/WT (red) | 1.08905 | 1 |
|
|