Expression of 1-1-4.4.7.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.978580.699
27DAP/17DAP0.928340.754
39DAP/27DAP1.970480.068
41DAP/39DAP0.848130.445
42DAP/41DAP0.502290.262
43DAP/42DAP0.842090.705
47DAP/43DAP0.778210.35
52DAP/47DAP1.140110.906
57DAP/52DAP0.916810.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.424630.018
17DAP/reference0.935120.448
27DAP/reference0.731620.012
39DAP/reference0.920950.298
41DAP/reference0.907230.267
42DAP/reference1.023760.731
43DAP/reference0.909750.302
47DAP/reference0.793810.004
52DAP/reference0.556550.013
57DAP/reference0.84030.071

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.870150.299
27DAP/17DAP0.869840.279
39DAP/27DAP1.166610.492
41DAP/39DAP1.245140.59
42DAP/41DAP0.893920.451
43DAP/42DAP0.908470.336
47DAP/43DAP1.006571
52DAP/47DAP0.808790.296
57DAP/52DAP0.911140.558
57DAP/7DAP0.631321

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.15070.024
17DAP/reference1.078410.399
27DAP/reference1.258410.073
39DAP/reference1.165840.081
41DAP/reference1.12860.191
42DAP/reference1.132670.308
43DAP/reference1.181910.024
47DAP/reference1.377690.021
52DAP/reference1.353240.015
57DAP/reference1.004510.775

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.328930.081
17DAP/reference1.033910.92
27DAP/reference1.214630.153
39DAP/reference1.130450.355
41DAP/reference1.100390.45
42DAP/reference1.040010.583
43DAP/reference0.868690.175
47DAP/reference1.174190.176
52DAP/reference0.846940.055
57DAP/reference0.920970.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.489630.024
17DAP/reference0.999630.855
27DAP/reference0.959530.302
39DAP/reference0.986790.643
41DAP/reference0.965440.56
42DAP/reference0.916340.134
43DAP/reference1.007560.712
47DAP/reference0.807210.048
52DAP/reference0.75480.083
57DAP/reference0.590140.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.952771
26DAP/20DAP1.095911
34DAP/26DAP0.742440.488
51DAP/34DAP1.03180.98
52DAP/51DAP1.093670.689
53DAP/52DAP0.724220.102
55DAP/53DAP0.864860.544
57DAP/55DAP1.230090.474
62DAP/57DAP1.105020.767
68DAP/62DAP0.908880.722
68DAP/14DAP1.424660.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.476480.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.934060.635
Mature Green Tomato/Ripe Tomato1.586560.053
Immature Eggplant/Mature Eggplant1.743450.05
Ripe Pepper/Ripe Tomato1.28821
Mature Eggplant/Ripe Tomato1.00491

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M820.69121
12-4/M820.79295
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.05641
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.35057
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.955121
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.165331
IL7-3/WTpooled1.23166
IL12-4/WTpooled1.090070.891
IL1-4/WTpooled0.968161
WT/WTpooled0.95236

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.068530.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.832450.536
DC3000/delta hrp 6h0.904270.95
DC3000/delta hrp 12h1.002331
DC3000/delta hrp 24h2.449820.026

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.231260.087
DC3000 delta B/DC3000 delta AB1.818070.081

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977691
Var 0h1.524410.782
Var 12h I row2-row10.746710.338
Var 12h NI row2-row11.109991
Var 36h I row2-row10.910811
Var 36h NI row2-row10.982380.791
Var 60h I row2-row10.836120.292
Var 60h NI row2-row10.847820.756
Time course 0hI-0hNI0.94670.634
Time course 12hI-12hNI1.04790.714
Time course 36hI-36hNI1.475560.005
Time course 60hI-60hNI3.778740.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.911980.348
transgenic ySAMdc/azygous control (breaker)0.653950.142
transgenic ySAMdc/azygous control (red)0.804741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.194850.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.656630.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.812391
Manapal/WT (break)0.796810.333
Manapal/WT (red)1.089051