Expression of 1-1-4.4.8.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.974310.801
27DAP/17DAP0.905880.801
39DAP/27DAP1.307180.382
41DAP/39DAP0.770240.117
42DAP/41DAP1.058910.978
43DAP/42DAP0.962980.909
47DAP/43DAP0.825930.42
52DAP/47DAP0.945710.843
57DAP/52DAP1.091040.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.162980.018
17DAP/reference1.101950.172
27DAP/reference1.081670.156
39DAP/reference0.986310.779
41DAP/reference1.017740.624
42DAP/reference1.038110.219
43DAP/reference1.128980.053
47DAP/reference1.062530.114
52DAP/reference0.925810.195
57DAP/reference1.101890.3

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.153380.218
27DAP/17DAP1.082460.706
39DAP/27DAP0.857010.102
41DAP/39DAP1.174970.603
42DAP/41DAP0.976620.77
43DAP/42DAP0.73890.022
47DAP/43DAP1.069030.749
52DAP/47DAP0.907120.314
57DAP/52DAP1.201330.211
57DAP/7DAP0.971451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.398060.034
17DAP/reference1.49370.006
27DAP/reference1.212060.009
39DAP/reference1.205690.007
41DAP/reference1.277590.016
42DAP/reference1.160390.132
43DAP/reference1.018261
47DAP/reference1.121250.081
52DAP/reference1.386830.007
57DAP/reference1.374360.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.207450.203
17DAP/reference1.224080.032
27DAP/reference1.251720.078
39DAP/reference1.219510.031
41DAP/reference1.078430.309
42DAP/reference1.108560.324
43DAP/reference1.101710.441
47DAP/reference1.169350.138
52DAP/reference0.932150.156
57DAP/reference0.962340.433

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.387020.024
17DAP/reference1.096390.394
27DAP/reference1.159290.049
39DAP/reference1.261840.014
41DAP/reference1.060810.357
42DAP/reference1.02120.836
43DAP/reference1.020681
47DAP/reference1.033040.901
52DAP/reference1.284120.144
57DAP/reference1.250040.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.037540.966
26DAP/20DAP1.859110.098
34DAP/26DAP0.817720.319
51DAP/34DAP0.694770.058
52DAP/51DAP0.854331
53DAP/52DAP1.042541
55DAP/53DAP0.866250.203
57DAP/55DAP1.402710.114
62DAP/57DAP1.20780.622
68DAP/62DAP1.270340.305
68DAP/14DAP1.168980.179

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.282320.049

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.488210.058
Mature Green Tomato/Ripe Tomato1.329660.053
Immature Eggplant/Mature Eggplant1.177680.07
Ripe Pepper/Ripe Tomato1.090571
Mature Eggplant/Ripe Tomato1.6780.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.959670.944
1-1-2/M820.915761
12-2/M820.95540.678
12-4/M820.930321
1-3/M821.119270.479
2-1-1/M820.938330.784
2-1/M820.59357
2-6/M820.883211
3-2/M821.063520.967
4-1-1/M820.814151
4-1/M821.052181
4-3-2/M821.034541
4-3/M821.122590.268
5-3/M821.313310.572
6-2/M820.76410.481
6-3/M820.921220.916
7-1/M820.865040.466
7-2/M821.076881
9-3-2/M820.938520.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.986451
IL7-5/WTpooled0.56555
IL7-3/WTpooled0.93729
IL12-4/WTpooled0.789870.52
IL1-4/WTpooled1.137971
WT/WTpooled1.001071

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.035861

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.006381
DC3000/delta hrp 6h1.013161
DC3000/delta hrp 12h0.944911
DC3000/delta hrp 24h1.010030.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.157540.145
DC3000 delta B/DC3000 delta AB1.116210.403

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.876211
Exp 36h1.317510.693
Exp 60h1.574030.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005511
Var 0h1.340570.594
Var 12h I row2-row11.086660.795
Var 12h NI row2-row11.096061
Var 36h I row2-row11.010041
Var 36h NI row2-row11.392471
Var 60h I row2-row10.910890.292
Var 60h NI row2-row10.844820.292
Time course 0hI-0hNI0.895760.349
Time course 12hI-12hNI1.108170.172
Time course 36hI-36hNI1.507470.023
Time course 60hI-60hNI1.555950.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.010350.863
transgenic ySAMdc/azygous control (breaker)1.755220.178
transgenic ySAMdc/azygous control (red)1.239590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.06360.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.818150.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.867831
Manapal/WT (break)1.118721
Manapal/WT (red)1.030991