Expression of 1-1-4.4.8.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97431 | 0.801 |
27DAP/17DAP | 0.90588 | 0.801 |
39DAP/27DAP | 1.30718 | 0.382 |
41DAP/39DAP | 0.77024 | 0.117 |
42DAP/41DAP | 1.05891 | 0.978 |
43DAP/42DAP | 0.96298 | 0.909 |
47DAP/43DAP | 0.82593 | 0.42 |
52DAP/47DAP | 0.94571 | 0.843 |
57DAP/52DAP | 1.09104 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16298 | 0.018 |
17DAP/reference | 1.10195 | 0.172 |
27DAP/reference | 1.08167 | 0.156 |
39DAP/reference | 0.98631 | 0.779 |
41DAP/reference | 1.01774 | 0.624 |
42DAP/reference | 1.03811 | 0.219 |
43DAP/reference | 1.12898 | 0.053 |
47DAP/reference | 1.06253 | 0.114 |
52DAP/reference | 0.92581 | 0.195 |
57DAP/reference | 1.10189 | 0.3 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15338 | 0.218 |
27DAP/17DAP | 1.08246 | 0.706 |
39DAP/27DAP | 0.85701 | 0.102 |
41DAP/39DAP | 1.17497 | 0.603 |
42DAP/41DAP | 0.97662 | 0.77 |
43DAP/42DAP | 0.7389 | 0.022 |
47DAP/43DAP | 1.06903 | 0.749 |
52DAP/47DAP | 0.90712 | 0.314 |
57DAP/52DAP | 1.20133 | 0.211 |
57DAP/7DAP | 0.97145 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39806 | 0.034 |
17DAP/reference | 1.4937 | 0.006 |
27DAP/reference | 1.21206 | 0.009 |
39DAP/reference | 1.20569 | 0.007 |
41DAP/reference | 1.27759 | 0.016 |
42DAP/reference | 1.16039 | 0.132 |
43DAP/reference | 1.01826 | 1 |
47DAP/reference | 1.12125 | 0.081 |
52DAP/reference | 1.38683 | 0.007 |
57DAP/reference | 1.37436 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20745 | 0.203 |
17DAP/reference | 1.22408 | 0.032 |
27DAP/reference | 1.25172 | 0.078 |
39DAP/reference | 1.21951 | 0.031 |
41DAP/reference | 1.07843 | 0.309 |
42DAP/reference | 1.10856 | 0.324 |
43DAP/reference | 1.10171 | 0.441 |
47DAP/reference | 1.16935 | 0.138 |
52DAP/reference | 0.93215 | 0.156 |
57DAP/reference | 0.96234 | 0.433 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38702 | 0.024 |
17DAP/reference | 1.09639 | 0.394 |
27DAP/reference | 1.15929 | 0.049 |
39DAP/reference | 1.26184 | 0.014 |
41DAP/reference | 1.06081 | 0.357 |
42DAP/reference | 1.0212 | 0.836 |
43DAP/reference | 1.02068 | 1 |
47DAP/reference | 1.03304 | 0.901 |
52DAP/reference | 1.28412 | 0.144 |
57DAP/reference | 1.25004 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03754 | 0.966 |
26DAP/20DAP | 1.85911 | 0.098 |
34DAP/26DAP | 0.81772 | 0.319 |
51DAP/34DAP | 0.69477 | 0.058 |
52DAP/51DAP | 0.85433 | 1 |
53DAP/52DAP | 1.04254 | 1 |
55DAP/53DAP | 0.86625 | 0.203 |
57DAP/55DAP | 1.40271 | 0.114 |
62DAP/57DAP | 1.2078 | 0.622 |
68DAP/62DAP | 1.27034 | 0.305 |
68DAP/14DAP | 1.16898 | 0.179 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.28232 | 0.049 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.48821 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.32966 | 0.053 |
Immature Eggplant/Mature Eggplant | 1.17768 | 0.07 |
Ripe Pepper/Ripe Tomato | 1.09057 | 1 |
Mature Eggplant/Ripe Tomato | 1.678 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95967 | 0.944 |
1-1-2/M82 | 0.91576 | 1 |
12-2/M82 | 0.9554 | 0.678 |
12-4/M82 | 0.93032 | 1 |
1-3/M82 | 1.11927 | 0.479 |
2-1-1/M82 | 0.93833 | 0.784 |
2-1/M82 | 0.59357 | |
2-6/M82 | 0.88321 | 1 |
3-2/M82 | 1.06352 | 0.967 |
4-1-1/M82 | 0.81415 | 1 |
4-1/M82 | 1.05218 | 1 |
4-3-2/M82 | 1.03454 | 1 |
4-3/M82 | 1.12259 | 0.268 |
5-3/M82 | 1.31331 | 0.572 |
6-2/M82 | 0.7641 | 0.481 |
6-3/M82 | 0.92122 | 0.916 |
7-1/M82 | 0.86504 | 0.466 |
7-2/M82 | 1.07688 | 1 |
9-3-2/M82 | 0.93852 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.98645 | 1 |
IL7-5/WTpooled | 0.56555 | |
IL7-3/WTpooled | 0.93729 | |
IL12-4/WTpooled | 0.78987 | 0.52 |
IL1-4/WTpooled | 1.13797 | 1 |
WT/WTpooled | 1.00107 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03586 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00638 | 1 |
DC3000/delta hrp 6h | 1.01316 | 1 |
DC3000/delta hrp 12h | 0.94491 | 1 |
DC3000/delta hrp 24h | 1.01003 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15754 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.11621 | 0.403 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87621 | 1 |
Exp 36h | 1.31751 | 0.693 |
Exp 60h | 1.57403 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00551 | 1 |
Var 0h | 1.34057 | 0.594 |
Var 12h I row2-row1 | 1.08666 | 0.795 |
Var 12h NI row2-row1 | 1.09606 | 1 |
Var 36h I row2-row1 | 1.01004 | 1 |
Var 36h NI row2-row1 | 1.39247 | 1 |
Var 60h I row2-row1 | 0.91089 | 0.292 |
Var 60h NI row2-row1 | 0.84482 | 0.292 |
Time course 0hI-0hNI | 0.89576 | 0.349 |
Time course 12hI-12hNI | 1.10817 | 0.172 |
Time course 36hI-36hNI | 1.50747 | 0.023 |
Time course 60hI-60hNI | 1.55595 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01035 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.75522 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.23959 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0636 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81815 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86783 | 1 |
Manapal/WT (break) | 1.11872 | 1 |
Manapal/WT (red) | 1.03099 | 1 |
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