Expression of 1-1-4.4.9.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.305170.739
27DAP/17DAP1.198560.857
39DAP/27DAP0.756320.378
41DAP/39DAP0.850850.51
42DAP/41DAP1.14750.856
43DAP/42DAP0.967380.914
47DAP/43DAP0.828660.48
52DAP/47DAP1.21370.886
57DAP/52DAP0.764940.778

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.949750.3
17DAP/reference0.979460.664
27DAP/reference0.96210.417
39DAP/reference1.153540.165
41DAP/reference1.166630.054
42DAP/reference0.858120.014
43DAP/reference0.93650.273
47DAP/reference0.920560.137
52DAP/reference0.917440.21
57DAP/reference0.993460.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.164320.569
27DAP/17DAP1.107730.848
39DAP/27DAP1.054721
41DAP/39DAP1.261730.382
42DAP/41DAP0.884690.524
43DAP/42DAP1.071150.664
47DAP/43DAP0.875360.202
52DAP/47DAP1.06380.816
57DAP/52DAP1.061250.657
57DAP/7DAP1.188661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876810.104
17DAP/reference1.150740.147
27DAP/reference1.112380.371
39DAP/reference0.871490.083
41DAP/reference0.924830.094
42DAP/reference1.17080.405
43DAP/reference0.971880.385
47DAP/reference0.92880.293
52DAP/reference0.969130.435
57DAP/reference1.147780.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.165090.75
17DAP/reference1.16880.028
27DAP/reference1.09150.715
39DAP/reference0.997640.661
41DAP/reference0.903020.148
42DAP/reference0.922590.261
43DAP/reference1.391550.114
47DAP/reference1.004561
52DAP/reference1.060850.629
57DAP/reference0.961310.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.997060.75
17DAP/reference1.074130.572
27DAP/reference1.226170.054
39DAP/reference1.30670.026
41DAP/reference1.205380.077
42DAP/reference1.140170.199
43DAP/reference0.965610.523
47DAP/reference1.110730.265
52DAP/reference0.945420.444
57DAP/reference0.882710.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.004841
26DAP/20DAP0.74970.512
34DAP/26DAP1.150041
51DAP/34DAP1.147410.775
52DAP/51DAP1.178810.542
53DAP/52DAP1.190580.91
55DAP/53DAP1.2820.555
57DAP/55DAP0.9140.587
62DAP/57DAP0.950460.871
68DAP/62DAP0.906160.7
68DAP/14DAP2.104070.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.087631

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant2.47798
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.28959
1-1-2/M821.32562
12-2/M82N/AN/A
12-4/M821.12083
1-3/M820.47536
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.94405
5-3/M820.888541
6-2/M820.74012
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.109170.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.629220.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.043390.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.092141
DC3000/delta hrp 24h1.079610.483

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.881781
Exp 36h0.810940.456
Exp 60h0.806160.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.95471
Var 0h11.48260.936
Var 12h I row2-row11.079030.692
Var 12h NI row2-row11.073361
Var 36h I row2-row11.097870.908
Var 36h NI row2-row10.95270.706
Var 60h I row2-row11.029540.562
Var 60h NI row2-row10.613930.483
Time course 0hI-0hNI1.00891
Time course 12hI-12hNI1.100160.65
Time course 36hI-36hNI0.984630.569
Time course 60hI-60hNI1.166950.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.101850.455
transgenic ySAMdc/azygous control (breaker)1.03231
transgenic ySAMdc/azygous control (red)1.05941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026840.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.028950.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.132771
Manapal/WT (break)1.118111
Manapal/WT (red)0.886950.315