Expression of 1-1-4.4.9.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.30517 | 0.739 |
27DAP/17DAP | 1.19856 | 0.857 |
39DAP/27DAP | 0.75632 | 0.378 |
41DAP/39DAP | 0.85085 | 0.51 |
42DAP/41DAP | 1.1475 | 0.856 |
43DAP/42DAP | 0.96738 | 0.914 |
47DAP/43DAP | 0.82866 | 0.48 |
52DAP/47DAP | 1.2137 | 0.886 |
57DAP/52DAP | 0.76494 | 0.778 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94975 | 0.3 |
17DAP/reference | 0.97946 | 0.664 |
27DAP/reference | 0.9621 | 0.417 |
39DAP/reference | 1.15354 | 0.165 |
41DAP/reference | 1.16663 | 0.054 |
42DAP/reference | 0.85812 | 0.014 |
43DAP/reference | 0.9365 | 0.273 |
47DAP/reference | 0.92056 | 0.137 |
52DAP/reference | 0.91744 | 0.21 |
57DAP/reference | 0.99346 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16432 | 0.569 |
27DAP/17DAP | 1.10773 | 0.848 |
39DAP/27DAP | 1.05472 | 1 |
41DAP/39DAP | 1.26173 | 0.382 |
42DAP/41DAP | 0.88469 | 0.524 |
43DAP/42DAP | 1.07115 | 0.664 |
47DAP/43DAP | 0.87536 | 0.202 |
52DAP/47DAP | 1.0638 | 0.816 |
57DAP/52DAP | 1.06125 | 0.657 |
57DAP/7DAP | 1.18866 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87681 | 0.104 |
17DAP/reference | 1.15074 | 0.147 |
27DAP/reference | 1.11238 | 0.371 |
39DAP/reference | 0.87149 | 0.083 |
41DAP/reference | 0.92483 | 0.094 |
42DAP/reference | 1.1708 | 0.405 |
43DAP/reference | 0.97188 | 0.385 |
47DAP/reference | 0.9288 | 0.293 |
52DAP/reference | 0.96913 | 0.435 |
57DAP/reference | 1.14778 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16509 | 0.75 |
17DAP/reference | 1.1688 | 0.028 |
27DAP/reference | 1.0915 | 0.715 |
39DAP/reference | 0.99764 | 0.661 |
41DAP/reference | 0.90302 | 0.148 |
42DAP/reference | 0.92259 | 0.261 |
43DAP/reference | 1.39155 | 0.114 |
47DAP/reference | 1.00456 | 1 |
52DAP/reference | 1.06085 | 0.629 |
57DAP/reference | 0.96131 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99706 | 0.75 |
17DAP/reference | 1.07413 | 0.572 |
27DAP/reference | 1.22617 | 0.054 |
39DAP/reference | 1.3067 | 0.026 |
41DAP/reference | 1.20538 | 0.077 |
42DAP/reference | 1.14017 | 0.199 |
43DAP/reference | 0.96561 | 0.523 |
47DAP/reference | 1.11073 | 0.265 |
52DAP/reference | 0.94542 | 0.444 |
57DAP/reference | 0.88271 | 0.138 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00484 | 1 |
26DAP/20DAP | 0.7497 | 0.512 |
34DAP/26DAP | 1.15004 | 1 |
51DAP/34DAP | 1.14741 | 0.775 |
52DAP/51DAP | 1.17881 | 0.542 |
53DAP/52DAP | 1.19058 | 0.91 |
55DAP/53DAP | 1.282 | 0.555 |
57DAP/55DAP | 0.914 | 0.587 |
62DAP/57DAP | 0.95046 | 0.871 |
68DAP/62DAP | 0.90616 | 0.7 |
68DAP/14DAP | 2.10407 | 0.311 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08763 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.47798 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.28959 | |
1-1-2/M82 | 1.32562 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.12083 | |
1-3/M82 | 0.47536 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.94405 | |
5-3/M82 | 0.88854 | 1 |
6-2/M82 | 0.74012 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.10917 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.62922 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04339 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.09214 | 1 |
DC3000/delta hrp 24h | 1.07961 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88178 | 1 |
Exp 36h | 0.81094 | 0.456 |
Exp 60h | 0.80616 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9547 | 1 |
Var 0h | 11.4826 | 0.936 |
Var 12h I row2-row1 | 1.07903 | 0.692 |
Var 12h NI row2-row1 | 1.07336 | 1 |
Var 36h I row2-row1 | 1.09787 | 0.908 |
Var 36h NI row2-row1 | 0.9527 | 0.706 |
Var 60h I row2-row1 | 1.02954 | 0.562 |
Var 60h NI row2-row1 | 0.61393 | 0.483 |
Time course 0hI-0hNI | 1.0089 | 1 |
Time course 12hI-12hNI | 1.10016 | 0.65 |
Time course 36hI-36hNI | 0.98463 | 0.569 |
Time course 60hI-60hNI | 1.16695 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10185 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 1.0323 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0594 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02684 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02895 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.13277 | 1 |
Manapal/WT (break) | 1.11811 | 1 |
Manapal/WT (red) | 0.88695 | 0.315 |
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