Expression of 1-1-4.4.9.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.925160.532
27DAP/17DAP1.054680.883
39DAP/27DAP1.194550.524
41DAP/39DAP0.998680.949
42DAP/41DAP0.870170.774
43DAP/42DAP1.076290.957
47DAP/43DAP1.055290.856
52DAP/47DAP0.799510.483
57DAP/52DAP1.035261

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.220260.057
17DAP/reference1.119420.037
27DAP/reference1.024140.996
39DAP/reference1.074820.249
41DAP/reference1.180030.145
42DAP/reference1.075720.076
43DAP/reference1.018161
47DAP/reference1.041071
52DAP/reference0.918670.079
57DAP/reference0.963430.377

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.057720.482
27DAP/17DAP1.062910.923
39DAP/27DAP0.953490.668
41DAP/39DAP1.064530.69
42DAP/41DAP0.982040.803
43DAP/42DAP1.148930.788
47DAP/43DAP1.045620.853
52DAP/47DAP1.043290.856
57DAP/52DAP0.976640.697
57DAP/7DAP0.970971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.89160.246
17DAP/reference0.906940.072
27DAP/reference1.083360.371
39DAP/reference1.154710.237
41DAP/reference1.154520.165
42DAP/reference1.136690.308
43DAP/reference1.08080.325
47DAP/reference1.159440.075
52DAP/reference1.184830.058
57DAP/reference1.143610.07

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.287880.213
17DAP/reference1.255920.03
27DAP/reference1.105520.297
39DAP/reference0.941230.189
41DAP/reference1.051290.862
42DAP/reference1.089660.543
43DAP/reference1.620720.042
47DAP/reference1.081190.212
52DAP/reference0.984940.5
57DAP/reference1.326930.055

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861840.092
17DAP/reference1.243820.13
27DAP/reference1.030470.871
39DAP/reference1.094890.163
41DAP/reference1.042240.692
42DAP/reference1.015241
43DAP/reference1.029830.858
47DAP/reference1.088450.82
52DAP/reference1.157720.491
57DAP/reference1.041730.842

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.18490.966
26DAP/20DAP1.285380.212
34DAP/26DAP1.020231
51DAP/34DAP1.24990.339
52DAP/51DAP0.93861
53DAP/52DAP1.405660.047
55DAP/53DAP0.929540.53
57DAP/55DAP1.122380.969
62DAP/57DAP1.028261
68DAP/62DAP0.746340.166
68DAP/14DAP1.267330.249

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.46750.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.397770.078
Mature Green Tomato/Ripe Tomato1.387870.034
Immature Eggplant/Mature Eggplant0.466250.065
Ripe Pepper/Ripe Tomato1.916970.256
Mature Eggplant/Ripe Tomato0.981831

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.058460.742
1-1-2/M821.061441
12-2/M820.9331
12-4/M820.75410.282
1-3/M821.119361
2-1-1/M820.66114
2-1/M820.53148
2-6/M821.072560.329
3-2/M821.135030.84
4-1-1/M821.35437
4-1/M82N/AN/A
4-3-2/M821.00564
4-3/M821.60691
5-3/M821.011341
6-2/M820.73171
6-3/M82N/AN/A
7-1/M820.93881
7-2/M821.30429
9-3-2/M821.145521

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.835830.243
IL2-6/WTpooled0.777860.358
IL7-5/WTpooled1.09381
IL7-3/WTpooled1.093031
IL12-4/WTpooled0.728010.543
IL1-4/WTpooled0.798350.415
WT/WTpooled1.000711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.029251

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.918141
DC3000/delta hrp 6h0.909740.95
DC3000/delta hrp 12h1.091691
DC3000/delta hrp 24h0.80330.077

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.083880.27
DC3000 delta B/DC3000 delta AB1.034950.571

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.666431
Exp 36h0.683190.171
Exp 60h0.585840.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994561
Var 0h1.392140.594
Var 12h I row2-row11.039690.692
Var 12h NI row2-row11.194150.34
Var 36h I row2-row10.972091
Var 36h NI row2-row10.924160.584
Var 60h I row2-row10.838440.292
Var 60h NI row2-row10.834540.302
Time course 0hI-0hNI0.975870.886
Time course 12hI-12hNI1.043710.572
Time course 36hI-36hNI1.354280.005
Time course 60hI-60hNI1.867560.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.003151
transgenic ySAMdc/azygous control (breaker)1.722520.178
transgenic ySAMdc/azygous control (red)1.185780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986790.568

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.213790.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.508580.083
Manapal/WT (break)1.448950.13
Manapal/WT (red)1.484270.164