Expression of 1-1-4.4.9.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.696420.111
27DAP/17DAP0.812710.741
39DAP/27DAP1.404120.906
41DAP/39DAP0.913970.641
42DAP/41DAP1.097790.931
43DAP/42DAP1.803670.168
47DAP/43DAP1.083630.716
52DAP/47DAP1.414160.801
57DAP/52DAP1.04711

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.844380.014
17DAP/reference1.522660.012
27DAP/reference1.163390.161
39DAP/reference1.48870.037
41DAP/reference1.563840.014
42DAP/reference2.032660.001
43DAP/reference1.415520.01
47DAP/reference1.721330.001
52DAP/reference1.22920.141
57DAP/reference1.383760.035

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029580.763
27DAP/17DAP1.42796
39DAP/27DAP0.89429
41DAP/39DAP2.015830.748
42DAP/41DAP2.907470.495
43DAP/42DAP0.95740.875
47DAP/43DAP0.71845
52DAP/47DAP1.034840.979
57DAP/52DAP1.297110.79
57DAP/7DAP0.43958

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.43864
17DAP/reference0.0557
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/reference1.41996
42DAP/reference0.357420.235
43DAP/referenceN/AN/A
47DAP/reference1.714280.014
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.53690.416
17DAP/reference1.981110.036
27DAP/reference2.060760.029
39DAP/reference1.692160.355
41DAP/reference1.127450.862
42DAP/reference3.1439
43DAP/reference1.399990.411
47DAP/reference2.334220.009
52DAP/reference1.403520.006
57DAP/reference1.400910.112

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference1.489340.306
27DAP/reference0.91401
39DAP/reference1.143570.307
41DAP/reference15.34510.397
42DAP/reference1.87126
43DAP/reference1.74181
47DAP/reference1.235020.115
52DAP/reference1.477070.108
57DAP/reference1.799020.228

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.764051
26DAP/20DAP0.48589
34DAP/26DAP0.710030.067
51DAP/34DAP1.136570.988
52DAP/51DAP1.95360.662
53DAP/52DAP0.73402
55DAP/53DAP1.233440.939
57DAP/55DAPN/AN/A
62DAP/57DAP0.54547
68DAP/62DAP1.37628
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.33568
Mature Eggplant/Ripe Tomato1.725540.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.984970.321
IL2-6/WTpooled1.233990.788
IL7-5/WTpooled0.935211
IL7-3/WTpooled0.90631
IL12-4/WTpooled0.963731
IL1-4/WTpooled1.082451
WT/WTpooled1.083390.789

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.48741
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.11150.594
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.93750.393

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.082861
Manapal/WT (red)0.930670.728