Expression of 1-1-4.4.9.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.69642 | 0.111 |
27DAP/17DAP | 0.81271 | 0.741 |
39DAP/27DAP | 1.40412 | 0.906 |
41DAP/39DAP | 0.91397 | 0.641 |
42DAP/41DAP | 1.09779 | 0.931 |
43DAP/42DAP | 1.80367 | 0.168 |
47DAP/43DAP | 1.08363 | 0.716 |
52DAP/47DAP | 1.41416 | 0.801 |
57DAP/52DAP | 1.0471 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.84438 | 0.014 |
17DAP/reference | 1.52266 | 0.012 |
27DAP/reference | 1.16339 | 0.161 |
39DAP/reference | 1.4887 | 0.037 |
41DAP/reference | 1.56384 | 0.014 |
42DAP/reference | 2.03266 | 0.001 |
43DAP/reference | 1.41552 | 0.01 |
47DAP/reference | 1.72133 | 0.001 |
52DAP/reference | 1.2292 | 0.141 |
57DAP/reference | 1.38376 | 0.035 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02958 | 0.763 |
27DAP/17DAP | 1.42796 | |
39DAP/27DAP | 0.89429 | |
41DAP/39DAP | 2.01583 | 0.748 |
42DAP/41DAP | 2.90747 | 0.495 |
43DAP/42DAP | 0.9574 | 0.875 |
47DAP/43DAP | 0.71845 | |
52DAP/47DAP | 1.03484 | 0.979 |
57DAP/52DAP | 1.29711 | 0.79 |
57DAP/7DAP | 0.43958 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43864 | |
17DAP/reference | 0.0557 | |
27DAP/reference | N/A | N/A |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.41996 | |
42DAP/reference | 0.35742 | 0.235 |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.71428 | 0.014 |
52DAP/reference | N/A | N/A |
57DAP/reference | N/A | N/A |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.5369 | 0.416 |
17DAP/reference | 1.98111 | 0.036 |
27DAP/reference | 2.06076 | 0.029 |
39DAP/reference | 1.69216 | 0.355 |
41DAP/reference | 1.12745 | 0.862 |
42DAP/reference | 3.1439 | |
43DAP/reference | 1.39999 | 0.411 |
47DAP/reference | 2.33422 | 0.009 |
52DAP/reference | 1.40352 | 0.006 |
57DAP/reference | 1.40091 | 0.112 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 1.48934 | 0.306 |
27DAP/reference | 0.91401 | |
39DAP/reference | 1.14357 | 0.307 |
41DAP/reference | 15.3451 | 0.397 |
42DAP/reference | 1.87126 | |
43DAP/reference | 1.74181 | |
47DAP/reference | 1.23502 | 0.115 |
52DAP/reference | 1.47707 | 0.108 |
57DAP/reference | 1.79902 | 0.228 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.76405 | 1 |
26DAP/20DAP | 0.48589 | |
34DAP/26DAP | 0.71003 | 0.067 |
51DAP/34DAP | 1.13657 | 0.988 |
52DAP/51DAP | 1.9536 | 0.662 |
53DAP/52DAP | 0.73402 | |
55DAP/53DAP | 1.23344 | 0.939 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 0.54547 | |
68DAP/62DAP | 1.37628 | |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.33568 | |
Mature Eggplant/Ripe Tomato | 1.72554 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98497 | 0.321 |
IL2-6/WTpooled | 1.23399 | 0.788 |
IL7-5/WTpooled | 0.93521 | 1 |
IL7-3/WTpooled | 0.9063 | 1 |
IL12-4/WTpooled | 0.96373 | 1 |
IL1-4/WTpooled | 1.08245 | 1 |
WT/WTpooled | 1.08339 | 0.789 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.48741 | |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.1115 | 0.594 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9375 | 0.393 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.08286 | 1 |
Manapal/WT (red) | 0.93067 | 0.728 |
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