TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-5.1.1.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.440260.017
27DAP/17DAP0.686240.11
39DAP/27DAP1.805810.07
41DAP/39DAP0.891130.536
42DAP/41DAP0.859420.774
43DAP/42DAP1.161410.763
47DAP/43DAP0.985060.926
52DAP/47DAP0.533410.048
57DAP/52DAP0.827310.79

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.431040.093
17DAP/reference1.079690.957
27DAP/reference0.810430.129
39DAP/reference0.962660.565
41DAP/reference0.723040.039
42DAP/reference1.34160.001
43DAP/reference1.358570.016
47DAP/reference1.085840.575
52DAP/reference0.679640.015
57DAP/reference0.857060.027

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.753280.075
27DAP/17DAP1.025210.928
39DAP/27DAP1.230890.158
41DAP/39DAP0.878670.219
42DAP/41DAP0.839050.203
43DAP/42DAP1.252730.028
47DAP/43DAP1.2410.674
52DAP/47DAP0.906960.413
57DAP/52DAP1.082220.699
57DAP/7DAP0.502361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.943470.024
17DAP/reference1.101510.092
27DAP/reference2.519810.006
39DAP/reference1.317630.033
41DAP/reference1.935710.015
42DAP/reference2.913570.006
43DAP/reference2.08230.006
47DAP/reference1.394480.028
52DAP/reference1.430190.026
57DAP/reference0.632110.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.518340.094
17DAP/reference0.824980.059
27DAP/reference1.665730.015
39DAP/reference0.828770.097
41DAP/reference1.034511
42DAP/reference1.35310.011
43DAP/reference1.18830.977
47DAP/reference1.825250.036
52DAP/reference0.746570.004
57DAP/reference1.286660.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.43260.026
17DAP/reference0.908010.313
27DAP/reference1.489080.017
39DAP/reference1.721080.01
41DAP/reference1.090260.439
42DAP/reference1.414670.041
43DAP/reference1.302240.022
47DAP/reference0.788610.005
52DAP/reference1.252220.349
57DAP/reference0.844960.118

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.868390.479
26DAP/20DAP1.198540.399
34DAP/26DAP1.035131
51DAP/34DAP1.357020.032
52DAP/51DAP0.817590.151
53DAP/52DAP0.995190.99
55DAP/53DAP0.596120.018
57DAP/55DAP0.710420.097
62DAP/57DAPN/AN/A
68DAP/62DAP1.042081
68DAP/14DAP0.70141N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.750190.102

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.017651
Mature Green Tomato/Ripe Tomato1.104620.437
Immature Eggplant/Mature Eggplant3.730860.05
Ripe Pepper/Ripe Tomato0.368240.224
Mature Eggplant/Ripe Tomato0.072360.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.764710.877
1-1-2/M821.202110.977
12-2/M821.302150.448
12-4/M820.982011
1-3/M822.379160.479
2-1-1/M821.715711
2-1/M820.635640.345
2-6/M823.769030.329
3-2/M820.65216N/A
4-1-1/M823.12321
4-1/M821.877021
4-3-2/M822.753410.241
4-3/M823.873210.268
5-3/M820.533840.395
6-2/M824.3708N/A
6-3/M821.152441
7-1/M820.759970.408
7-2/M823.61559N/A
9-3-2/M823.15678N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.728730.337
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.187951
IL12-4/WTpooled0.902721
IL1-4/WTpooled0.96775N/A
WT/WTpooled1.023311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.242111

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.057080.914
DC3000/delta hrp 6h1.061491
DC3000/delta hrp 12h1.131881
DC3000/delta hrp 24h0.838690.053

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.468760.023
DC3000 delta B/DC3000 delta AB0.499750.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.114061
Exp 36h2.241240.489
Exp 60h1.250120.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002251
Var 0h0.926610.933
Var 12h I row2-row10.779030.344
Var 12h NI row2-row10.944860.494
Var 36h I row2-row11.016121
Var 36h NI row2-row11.269910.482
Var 60h I row2-row11.135610.562
Var 60h NI row2-row11.015211
Time course 0hI-0hNI0.985590.973
Time course 12hI-12hNI0.987480.953
Time course 36hI-36hNI0.847440.029
Time course 60hI-60hNI0.237240.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.660750.391
transgenic ySAMdc/azygous control (breaker)0.440680.142
transgenic ySAMdc/azygous control (red)1.769661

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.13980.089

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.560320.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.090461
Manapal/WT (break)1.009071
Manapal/WT (red)1.420730.164