Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.1.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.45027	0.812
27DAP/17DAP	1.17362	0.86
39DAP/27DAP	0.99529	0.769
41DAP/39DAP	0.67643	0.16
42DAP/41DAP	1.31761	0.871
43DAP/42DAP	1.28585	1
47DAP/43DAP	1.5499	0.926
52DAP/47DAP	1.19274	0.793
57DAP/52DAP	0.86756	0.85

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07279
17DAP/reference	N/A	N/A
27DAP/reference	N/A	N/A
39DAP/reference	0.6665
41DAP/reference	0.70897	0.009
42DAP/reference	1.55822	0.065
43DAP/reference	N/A	N/A
47DAP/reference	1.40645	0.011
52DAP/reference	0.75025
57DAP/reference	0.5431

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.5898	0.103
27DAP/17DAP	1.5624	0.05
39DAP/27DAP	1.03806	0.984
41DAP/39DAP	0.9823	1
42DAP/41DAP	0.8217	0.353
43DAP/42DAP	1.88303	0.554
47DAP/43DAP	1.22443	1
52DAP/47DAP	1.23788	0.991
57DAP/52DAP	0.76864	0.494
57DAP/7DAP	0.57734	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.1967	0.085
17DAP/reference	1.01433	0.693
27DAP/reference	1.18874	0.088
39DAP/reference	1.10064	0.391
41DAP/reference	1.13824	0.46
42DAP/reference	1.52517	0.059
43DAP/reference	1.32161	0.031
47DAP/reference	2.13903	0.016
52DAP/reference	1.16036	0.121
57DAP/reference	0.90212	0.137

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.68044	0.412
17DAP/reference	0.95687	0.561
27DAP/reference	0.7865	0.173
39DAP/reference	0.46101
41DAP/reference	2.87903
42DAP/reference	1.2925
43DAP/reference	0.95258	0.607
47DAP/reference	0.84135	0.007
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96202	0.489
17DAP/reference	1.06031	0.784
27DAP/reference	1.14311	0.777
39DAP/reference	1.07217	0.633
41DAP/reference	1.07307	0.554
42DAP/reference	0.87449	0.134
43DAP/reference	0.68657	0.037
47DAP/reference	0.98438	0.626
52DAP/reference	0.93431	0.582
57DAP/reference	0.72138

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.55804	0.44
26DAP/20DAP	0.69103
34DAP/26DAP	1.75993	0.542
51DAP/34DAP	N/A	N/A
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.24315	0.944
55DAP/53DAP	0.94821	0.82
57DAP/55DAP	0.9181
62DAP/57DAP	N/A	N/A
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.87404	0.321
IL2-6/WTpooled	1.21328	0.788
IL7-5/WTpooled	1.13306	0.792
IL7-3/WTpooled	0.95015	1
IL12-4/WTpooled	1.46728	0.52
IL1-4/WTpooled	1.34144	0.426
WT/WTpooled	0.94268	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	4.28727
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.25436
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	28.502

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A