Expression of 1-1-5.1.1.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.225170.681
27DAP/17DAP0.663980.147
39DAP/27DAP1.46480.493
41DAP/39DAP1.086270.789
42DAP/41DAP0.906221
43DAP/42DAP1.966010.053
47DAP/43DAP0.530080.062
52DAP/47DAP0.789090.486
57DAP/52DAP1.157210.941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.92960.39
17DAP/reference1.134440.508
27DAP/reference1.666350.008
39DAP/reference0.964550.624
41DAP/reference0.927850.341
42DAP/reference1.781340.001
43DAP/reference1.002850.904
47DAP/reference1.462240.379
52DAP/reference1.350940.019
57DAP/reference1.180340.079

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.811750.323
27DAP/17DAP1.940330.075
39DAP/27DAP1.14870.483
41DAP/39DAP0.836710.096
42DAP/41DAP0.931090.541
43DAP/42DAP1.137920.351
47DAP/43DAP1.086870.54
52DAP/47DAP2.235590.06
57DAP/52DAP1.691710.066
57DAP/7DAP1.004271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.76180.037
17DAP/reference1.834410.007
27DAP/reference1.428870.008
39DAP/reference1.121670.391
41DAP/reference1.816260.032
42DAP/reference1.439310.037
43DAP/reference1.844070.007
47DAP/reference1.438070.102
52DAP/reference1.271330.229
57DAP/reference1.79530.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.924290.329
17DAP/reference1.35320.089
27DAP/reference1.521960.018
39DAP/reference1.19570.529
41DAP/reference1.320120.038
42DAP/reference1.269030.045
43DAP/reference0.931180.385
47DAP/reference0.897630.05
52DAP/reference0.962690.433
57DAP/reference1.014790.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.370280.017
17DAP/reference1.206780.243
27DAP/reference1.595290.021
39DAP/reference1.268160.009
41DAP/reference1.21850.067
42DAP/reference1.795880.007
43DAP/reference1.64880.016
47DAP/reference1.999160.006
52DAP/reference1.735460.059
57DAP/reference2.10990.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.641550.85
26DAP/20DAP1.514540.196
34DAP/26DAP1.041771
51DAP/34DAP0.802460.522
52DAP/51DAP1.106840.606
53DAP/52DAP1.04730.961
55DAP/53DAP1.011260.886
57DAP/55DAP0.89520.527
62DAP/57DAP1.32483
68DAP/62DAP1.098990.866
68DAP/14DAP1.22382

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.074850.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.826860.279
Mature Green Tomato/Ripe Tomato1.545360.632
Immature Eggplant/Mature Eggplant0.579390.067
Ripe Pepper/Ripe Tomato2.32651
Mature Eggplant/Ripe Tomato1.792240.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.804020.69
1-1-2/M821.069051
12-2/M821.07353
12-4/M820.970360.619
1-3/M820.982661
2-1-1/M821.32449
2-1/M82N/AN/A
2-6/M821.31461
3-2/M821.02591
4-1-1/M821.23021
4-1/M820.73499
4-3-2/M82N/AN/A
4-3/M820.845130.611
5-3/M821.070761
6-2/M820.66696
6-3/M820.906421
7-1/M82N/AN/A
7-2/M821.148421
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.840910.321
IL2-6/WTpooled1.350120.456
IL7-5/WTpooled1.296391
IL7-3/WTpooled0.800111
IL12-4/WTpooled0.961710.71
IL1-4/WTpooled1.041591
WT/WTpooled1.128921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.041021

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.074260.921
DC3000/delta hrp 6h1.012780.95
DC3000/delta hrp 12h1.023031
DC3000/delta hrp 24h1.06640.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.27846
DC3000 delta B/DC3000 delta AB0.951380.71

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.919821
Exp 36h0.886030.749
Exp 60h0.898030.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02321
Var 0h0.825531
Var 12h I row2-row11.027721
Var 12h NI row2-row11.031651
Var 36h I row2-row11.283950.283
Var 36h NI row2-row12.775181
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.224820.904
Time course 0hI-0hNI0.911910.552
Time course 12hI-12hNI0.864150.522
Time course 36hI-36hNI1.233070.218
Time course 60hI-60hNI0.781770.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.374360.326
transgenic ySAMdc/azygous control (breaker)1.511790.248
transgenic ySAMdc/azygous control (red)1.091271

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.853070.125

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.759710.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)2.029460.381
Manapal/WT (red)1.568010.413