Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.1.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.09368	0.586
27DAP/17DAP	0.83603	0.749
39DAP/27DAP	1.50226	0.593
41DAP/39DAP	1.33939	0.822
42DAP/41DAP	0.6715	0.774
43DAP/42DAP	1.24889	0.768
47DAP/43DAP	1.5929	0.618
52DAP/47DAP	1.24501	0.867
57DAP/52DAP	1.32702	0.993

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02169	0.707
17DAP/reference	0.946	0.701
27DAP/reference	1.0798	0.696
39DAP/reference	0.93867	0.663
41DAP/reference	0.72038	0.039
42DAP/reference	1.07367	0.632
43DAP/reference	1.46711	0.899
47DAP/reference	1.36062	0.254
52DAP/reference	0.8698	0.382
57DAP/reference	1.30904	1

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.78489	0.105
27DAP/17DAP	0.70703
39DAP/27DAP	N/A	N/A
41DAP/39DAP	1.18043
42DAP/41DAP	1.56691	0.694
43DAP/42DAP	0.66303
47DAP/43DAP	1.53054	0.389
52DAP/47DAP	0.6794	0.183
57DAP/52DAP	0.76365
57DAP/7DAP	0.88424	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.64804	0.086
17DAP/reference	0.41737	0.011
27DAP/reference	0.50512	0.01
39DAP/reference	0.3833	0.011
41DAP/reference	0.49182	0.027
42DAP/reference	0.52755	0.015
43DAP/reference	0.48354	0.011
47DAP/reference	1.20104	0.413
52DAP/reference	0.70665	0.024
57DAP/reference	0.7017	0.047

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89878	0.487
17DAP/reference	1.16819	0.584
27DAP/reference	1.45964	0.03
39DAP/reference	1.28811	0.026
41DAP/reference	1.45764	0.016
42DAP/reference	1.41033	0.012
43DAP/reference	1.04516	1
47DAP/reference	1.02916	0.916
52DAP/reference	1.13212	0.106
57DAP/reference	1.10908	0.609

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.71193	0.071
17DAP/reference	0.91683	0.433
27DAP/reference	0.6302	0.042
39DAP/reference	0.76652	0.069
41DAP/reference	0.57975	0.021
42DAP/reference	0.73921	0.087
43DAP/reference	1.07105	0.738
47DAP/reference	1.64384	0.005
52DAP/reference	1.02336	0.8
57DAP/reference	1.3683	0.135

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.63291	1
26DAP/20DAP	0.83899	0.183
34DAP/26DAP	1.74764	0.114
51DAP/34DAP	N/A	N/A
52DAP/51DAP	0.88646
53DAP/52DAP	1.05898
55DAP/53DAP	1.42963	0.656
57DAP/55DAP	N/A	N/A
62DAP/57DAP	N/A	N/A
68DAP/62DAP	0.99696
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.46436	0.018

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.09701	0.493
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.06681	1
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	1.26146	0.785
IL1-4/WTpooled	1.33047	1
WT/WTpooled	1.12182	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A