Expression of 1-1-5.1.1.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.120950.964
27DAP/17DAP0.714950.38
39DAP/27DAP1.618110.915
41DAP/39DAP0.76380.47
42DAP/41DAP0.802061
43DAP/42DAP0.930710.883
47DAP/43DAP1.03070.864
52DAP/47DAP1.254950.861
57DAP/52DAP0.61470.734

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.11815
17DAP/reference1.06166
27DAP/reference0.772920.011
39DAP/referenceN/AN/A
41DAP/reference0.924640.434
42DAP/reference0.944190.287
43DAP/referenceN/AN/A
47DAP/reference1.264410.024
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.719690.299
27DAP/17DAP1.62526
39DAP/27DAP0.77964
41DAP/39DAPN/AN/A
42DAP/41DAP0.91550.768
43DAP/42DAP1.17325
47DAP/43DAP1.407390.848
52DAP/47DAP0.41332
57DAP/52DAP0.62305
57DAP/7DAP2.273550.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.273850.418
17DAP/reference0.940420.389
27DAP/reference1.146060.301
39DAP/reference1.151310.601
41DAP/reference0.980720.538
42DAP/reference1.065851
43DAP/reference1.07150.873
47DAP/reference0.908980.044
52DAP/reference0.864880.09
57DAP/reference0.83170.059

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.219340.559
17DAP/reference0.7558
27DAP/reference1.453550.087
39DAP/reference1.026640.824
41DAP/reference1.090690.749
42DAP/reference2.1307
43DAP/reference1.16890.751
47DAP/reference1.1079
52DAP/reference1.254190.343
57DAP/reference1.148520.089

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.183480.116
17DAP/reference1.161480.45
27DAP/reference1.278270.018
39DAP/reference1.081340.596
41DAP/reference1.147680.439
42DAP/reference1.057750.648
43DAP/reference0.941780.334
47DAP/reference0.766020.383
52DAP/reference1.291630.517
57DAP/reference1.062850.581

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAPN/AN/A
26DAP/20DAPN/AN/A
34DAP/26DAP0.797180.129
51DAP/34DAP2.57143
52DAP/51DAP0.357420.151
53DAP/52DAP1.177070.688
55DAP/53DAP1.32063
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.944120.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.905951
IL2-6/WTpooled1.04956
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.790760.293
IL12-4/WTpooled0.812530.554
IL1-4/WTpooled1.053321
WT/WTpooled1.152190.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.93661
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.587760.381
Manapal/WT (red)N/AN/A