Expression of 1-1-5.1.10.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05234 | 0.893 |
27DAP/17DAP | 1.16854 | 0.849 |
39DAP/27DAP | 1.21926 | 0.565 |
41DAP/39DAP | 1.10551 | 0.78 |
42DAP/41DAP | 1.01242 | 1 |
43DAP/42DAP | 1.19908 | 0.636 |
47DAP/43DAP | 1.00785 | 0.98 |
52DAP/47DAP | 0.80349 | 0.498 |
57DAP/52DAP | 1.05553 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16726 | 0.154 |
17DAP/reference | 1.03875 | 0.427 |
27DAP/reference | 1.01494 | 0.934 |
39DAP/reference | 1.02831 | 0.639 |
41DAP/reference | 1.05942 | 0.133 |
42DAP/reference | 1.02308 | 0.656 |
43DAP/reference | 0.98685 | 0.763 |
47DAP/reference | 0.98922 | 0.503 |
52DAP/reference | 1.13692 | 0.102 |
57DAP/reference | 0.92568 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86982 | 0.363 |
27DAP/17DAP | 0.84968 | 0.418 |
39DAP/27DAP | 0.95452 | 0.563 |
41DAP/39DAP | 1.15382 | 1 |
42DAP/41DAP | 1.28729 | 0.134 |
43DAP/42DAP | 1.05951 | 0.585 |
47DAP/43DAP | 0.82277 | 0.305 |
52DAP/47DAP | 2.37237 | 0.048 |
57DAP/52DAP | 1.7471 | 0.05 |
57DAP/7DAP | 4.75365 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02456 | 0.91 |
17DAP/reference | 1.14031 | 0.134 |
27DAP/reference | 1.01773 | 0.664 |
39DAP/reference | 1.288 | 0.042 |
41DAP/reference | 1.16846 | 0.184 |
42DAP/reference | 1.0847 | 1 |
43DAP/reference | 0.9904 | 0.58 |
47DAP/reference | 0.99377 | 1 |
52DAP/reference | 0.94631 | 0.363 |
57DAP/reference | 1.07649 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18082 | 0.141 |
17DAP/reference | 1.20444 | 0.077 |
27DAP/reference | 1.19569 | 0.063 |
39DAP/reference | 1.16245 | 0.324 |
41DAP/reference | 1.12186 | 0.491 |
42DAP/reference | 1.00081 | 0.723 |
43DAP/reference | 1.13772 | 0.466 |
47DAP/reference | 0.9816 | 0.5 |
52DAP/reference | 1.20535 | 0.015 |
57DAP/reference | 1.19332 | 0.14 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47299 | 0.021 |
17DAP/reference | 1.07106 | 0.563 |
27DAP/reference | 1.23408 | 0.125 |
39DAP/reference | 1.19598 | 0.067 |
41DAP/reference | 1.12682 | 0.257 |
42DAP/reference | 1.21455 | 0.158 |
43DAP/reference | 1.20852 | 0.126 |
47DAP/reference | 1.06362 | 0.63 |
52DAP/reference | 0.96527 | 0.562 |
57DAP/reference | 0.91155 | 0.167 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97019 | 1 |
26DAP/20DAP | 4.29018 | 0.366 |
34DAP/26DAP | 5.94538 | 1 |
51DAP/34DAP | 1.32573 | 0.791 |
52DAP/51DAP | 8.18674 | 0.033 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 1.39405 | |
57DAP/55DAP | 0.55893 | 0.049 |
62DAP/57DAP | 1.75151 | 0.445 |
68DAP/62DAP | 1.26662 | 0.787 |
68DAP/14DAP | 0.83171 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.32223 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.76798 | 0.23 |
Mature Green Tomato/Ripe Tomato | 0.82662 | 0.119 |
Immature Eggplant/Mature Eggplant | 1.01215 | 0.683 |
Ripe Pepper/Ripe Tomato | 1.30939 | 1 |
Mature Eggplant/Ripe Tomato | 1.22314 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03479 | 1 |
1-1-2/M82 | 1.14042 | 1 |
12-2/M82 | 0.73528 | 0.639 |
12-4/M82 | 1.01444 | 1 |
1-3/M82 | 1.3028 | 0.479 |
2-1-1/M82 | 0.91479 | 0.465 |
2-1/M82 | 0.91445 | 0.322 |
2-6/M82 | 1.04409 | 0.364 |
3-2/M82 | 0.89265 | |
4-1-1/M82 | 1.29738 | 0.977 |
4-1/M82 | 1.30516 | 1 |
4-3-2/M82 | 1.34328 | 1 |
4-3/M82 | 0.71439 | 0.578 |
5-3/M82 | 1.12101 | 0.455 |
6-2/M82 | 1.0031 | |
6-3/M82 | 0.96375 | 1 |
7-1/M82 | 1.00852 | 1 |
7-2/M82 | 1.10312 | 0.385 |
9-3-2/M82 | 1.43104 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88777 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.69067 | 0.543 |
IL1-4/WTpooled | 1.90102 | 1 |
WT/WTpooled | 0.9373 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03677 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97634 | 1 |
DC3000/delta hrp 6h | 1.07194 | 1 |
DC3000/delta hrp 12h | 1.25713 | 1 |
DC3000/delta hrp 24h | 0.60357 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.21596 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.64807 | 0.117 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.85549 | 0.328 |
Exp 36h | 0.75319 | 0.397 |
Exp 60h | 0.84611 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99434 | 1 |
Var 0h | 0.54919 | 0.259 |
Var 12h I row2-row1 | 0.93733 | 0.627 |
Var 12h NI row2-row1 | 1.03787 | 1 |
Var 36h I row2-row1 | 1.02619 | 1 |
Var 36h NI row2-row1 | 1.31818 | 0.482 |
Var 60h I row2-row1 | 1.04243 | 1 |
Var 60h NI row2-row1 | 0.96248 | 1 |
Time course 0hI-0hNI | 0.91831 | 0.489 |
Time course 12hI-12hNI | 1.08857 | 0.698 |
Time course 36hI-36hNI | 1.01125 | 0.753 |
Time course 60hI-60hNI | 0.87074 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08315 | 0.372 |
transgenic ySAMdc/azygous control (breaker) | 1.03457 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08056 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95591 | 0.072 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26676 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.89326 | 0.096 |
Manapal/WT (break) | 1.6014 | 0.13 |
Manapal/WT (red) | 1.92886 | 0.133 |
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