Expression of 1-1-5.1.10.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.052340.893
27DAP/17DAP1.168540.849
39DAP/27DAP1.219260.565
41DAP/39DAP1.105510.78
42DAP/41DAP1.012421
43DAP/42DAP1.199080.636
47DAP/43DAP1.007850.98
52DAP/47DAP0.803490.498
57DAP/52DAP1.055530.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.167260.154
17DAP/reference1.038750.427
27DAP/reference1.014940.934
39DAP/reference1.028310.639
41DAP/reference1.059420.133
42DAP/reference1.023080.656
43DAP/reference0.986850.763
47DAP/reference0.989220.503
52DAP/reference1.136920.102
57DAP/reference0.925680.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.869820.363
27DAP/17DAP0.849680.418
39DAP/27DAP0.954520.563
41DAP/39DAP1.153821
42DAP/41DAP1.287290.134
43DAP/42DAP1.059510.585
47DAP/43DAP0.822770.305
52DAP/47DAP2.372370.048
57DAP/52DAP1.74710.05
57DAP/7DAP4.753651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.024560.91
17DAP/reference1.140310.134
27DAP/reference1.017730.664
39DAP/reference1.2880.042
41DAP/reference1.168460.184
42DAP/reference1.08471
43DAP/reference0.99040.58
47DAP/reference0.993771
52DAP/reference0.946310.363
57DAP/reference1.076490.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.180820.141
17DAP/reference1.204440.077
27DAP/reference1.195690.063
39DAP/reference1.162450.324
41DAP/reference1.121860.491
42DAP/reference1.000810.723
43DAP/reference1.137720.466
47DAP/reference0.98160.5
52DAP/reference1.205350.015
57DAP/reference1.193320.14

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.472990.021
17DAP/reference1.071060.563
27DAP/reference1.234080.125
39DAP/reference1.195980.067
41DAP/reference1.126820.257
42DAP/reference1.214550.158
43DAP/reference1.208520.126
47DAP/reference1.063620.63
52DAP/reference0.965270.562
57DAP/reference0.911550.167

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.970191
26DAP/20DAP4.290180.366
34DAP/26DAP5.945381
51DAP/34DAP1.325730.791
52DAP/51DAP8.186740.033
53DAP/52DAPN/AN/A
55DAP/53DAP1.39405
57DAP/55DAP0.558930.049
62DAP/57DAP1.751510.445
68DAP/62DAP1.266620.787
68DAP/14DAP0.831710.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.322230.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.767980.23
Mature Green Tomato/Ripe Tomato0.826620.119
Immature Eggplant/Mature Eggplant1.012150.683
Ripe Pepper/Ripe Tomato1.309391
Mature Eggplant/Ripe Tomato1.223141

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.034791
1-1-2/M821.140421
12-2/M820.735280.639
12-4/M821.014441
1-3/M821.30280.479
2-1-1/M820.914790.465
2-1/M820.914450.322
2-6/M821.044090.364
3-2/M820.89265
4-1-1/M821.297380.977
4-1/M821.305161
4-3-2/M821.343281
4-3/M820.714390.578
5-3/M821.121010.455
6-2/M821.0031
6-3/M820.963751
7-1/M821.008521
7-2/M821.103120.385
9-3-2/M821.431040.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.88777
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.690670.543
IL1-4/WTpooled1.901021
WT/WTpooled0.93731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.036770.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.976341
DC3000/delta hrp 6h1.071941
DC3000/delta hrp 12h1.257131
DC3000/delta hrp 24h0.603570.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.215960.094
DC3000 delta B/DC3000 delta AB1.648070.117

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.855490.328
Exp 36h0.753190.397
Exp 60h0.846110.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994341
Var 0h0.549190.259
Var 12h I row2-row10.937330.627
Var 12h NI row2-row11.037871
Var 36h I row2-row11.026191
Var 36h NI row2-row11.318180.482
Var 60h I row2-row11.042431
Var 60h NI row2-row10.962481
Time course 0hI-0hNI0.918310.489
Time course 12hI-12hNI1.088570.698
Time course 36hI-36hNI1.011250.753
Time course 60hI-60hNI0.870740.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.083150.372
transgenic ySAMdc/azygous control (breaker)1.034571
transgenic ySAMdc/azygous control (red)1.080560.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.955910.072

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.266760.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.893260.096
Manapal/WT (break)1.60140.13
Manapal/WT (red)1.928860.133