Expression of 1-1-5.1.10.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99909 | 0.847 |
27DAP/17DAP | 0.80578 | 0.487 |
39DAP/27DAP | 2.27966 | 0.047 |
41DAP/39DAP | 0.62208 | 0.047 |
42DAP/41DAP | 1.11543 | 0.962 |
43DAP/42DAP | 1.11897 | 0.948 |
47DAP/43DAP | 0.71153 | 0.231 |
52DAP/47DAP | 1.47231 | 0.608 |
57DAP/52DAP | 1.28307 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97333 | 0.578 |
17DAP/reference | 1.14978 | 0.457 |
27DAP/reference | 1.38495 | 0.022 |
39DAP/reference | 1.24815 | 0.021 |
41DAP/reference | 1.07559 | 0.624 |
42DAP/reference | 1.19168 | 0.011 |
43DAP/reference | 1.16705 | 0.102 |
47DAP/reference | 1.26326 | 0.011 |
52DAP/reference | 1.11637 | 0.242 |
57DAP/reference | 1.20409 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23508 | 0.326 |
27DAP/17DAP | 0.98751 | 0.943 |
39DAP/27DAP | 0.98784 | 0.898 |
41DAP/39DAP | 1.36775 | 1 |
42DAP/41DAP | 1.14858 | 0.81 |
43DAP/42DAP | 0.8921 | 0.321 |
47DAP/43DAP | 1.09555 | 0.817 |
52DAP/47DAP | 1.04314 | 0.951 |
57DAP/52DAP | 1.11808 | 0.444 |
57DAP/7DAP | 1.12567 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92021 | 0.27 |
17DAP/reference | 0.86202 | 0.192 |
27DAP/reference | 0.90581 | 0.125 |
39DAP/reference | 1.07912 | 0.267 |
41DAP/reference | 1.11201 | 0.949 |
42DAP/reference | 1.15583 | 0.405 |
43DAP/reference | 0.98085 | 0.502 |
47DAP/reference | 0.95372 | 0.504 |
52DAP/reference | 0.95463 | 0.254 |
57DAP/reference | 1.09449 | 0.698 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93027 | 0.441 |
17DAP/reference | 1.20091 | 0.311 |
27DAP/reference | 1.16768 | 0.131 |
39DAP/reference | 0.96555 | 0.428 |
41DAP/reference | 0.92394 | 0.322 |
42DAP/reference | 1.00915 | 0.723 |
43DAP/reference | 0.99164 | 0.748 |
47DAP/reference | 1.11541 | 0.274 |
52DAP/reference | 0.81665 | 0.203 |
57DAP/reference | 0.84667 | 0.116 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13715 | 0.146 |
17DAP/reference | 1.03199 | 0.641 |
27DAP/reference | 1.04239 | 1 |
39DAP/reference | 1.10205 | 0.235 |
41DAP/reference | 1.12352 | 0.028 |
42DAP/reference | 1.04641 | 0.818 |
43DAP/reference | 1.09189 | 0.617 |
47DAP/reference | 1.42695 | 0.009 |
52DAP/reference | 0.90942 | 0.433 |
57DAP/reference | 1.6056 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8967 | 1 |
26DAP/20DAP | 1.62627 | 0.099 |
34DAP/26DAP | 0.95934 | 0.917 |
51DAP/34DAP | 1.44337 | 0.047 |
52DAP/51DAP | 0.92254 | 1 |
53DAP/52DAP | 1.278 | |
55DAP/53DAP | 0.73791 | 0.176 |
57DAP/55DAP | 0.92919 | 0.647 |
62DAP/57DAP | 0.70954 | 0.05 |
68DAP/62DAP | 0.92511 | 0.7 |
68DAP/14DAP | 2.12914 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.49503 | 0.162 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.18821 | 0.067 |
Mature Green Tomato/Ripe Tomato | 1.20686 | 0.437 |
Immature Eggplant/Mature Eggplant | 0.76299 | 0.077 |
Ripe Pepper/Ripe Tomato | 3.50903 | 1 |
Mature Eggplant/Ripe Tomato | 0.55196 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07027 | 1 |
1-1-2/M82 | 1.19415 | 0.977 |
12-2/M82 | 1.1195 | 1 |
12-4/M82 | 1.11845 | 1 |
1-3/M82 | 1.18333 | 0.479 |
2-1-1/M82 | 0.94541 | 1 |
2-1/M82 | 0.94628 | 0.519 |
2-6/M82 | 1.35986 | 0.374 |
3-2/M82 | 0.94927 | 0.752 |
4-1-1/M82 | 1.15596 | 1 |
4-1/M82 | 1.09403 | 1 |
4-3-2/M82 | 1.27291 | 0.508 |
4-3/M82 | 1.45198 | 1 |
5-3/M82 | 0.85153 | 0.447 |
6-2/M82 | 1.16666 | |
6-3/M82 | 0.88695 | 0.982 |
7-1/M82 | 1.01217 | 1 |
7-2/M82 | 1.1161 | 0.385 |
9-3-2/M82 | 1.36671 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17045 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98318 | 1 |
DC3000/delta hrp 6h | 0.95987 | 0.95 |
DC3000/delta hrp 12h | 1.08461 | 1 |
DC3000/delta hrp 24h | 0.78939 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.26151 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.34591 | 0.105 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86246 | 1 |
Exp 36h | 1.02674 | 1 |
Exp 60h | 0.984 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99034 | 1 |
Var 0h | 0.82146 | 1 |
Var 12h I row2-row1 | 1.04088 | 1 |
Var 12h NI row2-row1 | 1.10471 | 1 |
Var 36h I row2-row1 | 1.04583 | 1 |
Var 36h NI row2-row1 | 0.92573 | 0.645 |
Var 60h I row2-row1 | 0.71564 | 0.293 |
Var 60h NI row2-row1 | 1.04538 | 1 |
Time course 0hI-0hNI | 0.96057 | 0.798 |
Time course 12hI-12hNI | 1.09666 | 0.467 |
Time course 36hI-36hNI | 1.33443 | 0.005 |
Time course 60hI-60hNI | 1.70853 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01422 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 0.90872 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.65245 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.48264 | 0.041 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.74516 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.48809 | 0.083 |
Manapal/WT (break) | 1.86043 | 0.183 |
Manapal/WT (red) | 1.79231 | 0.142 |
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