Expression of 1-1-5.1.10.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999090.847
27DAP/17DAP0.805780.487
39DAP/27DAP2.279660.047
41DAP/39DAP0.622080.047
42DAP/41DAP1.115430.962
43DAP/42DAP1.118970.948
47DAP/43DAP0.711530.231
52DAP/47DAP1.472310.608
57DAP/52DAP1.283070.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.973330.578
17DAP/reference1.149780.457
27DAP/reference1.384950.022
39DAP/reference1.248150.021
41DAP/reference1.075590.624
42DAP/reference1.191680.011
43DAP/reference1.167050.102
47DAP/reference1.263260.011
52DAP/reference1.116370.242
57DAP/reference1.204090.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.235080.326
27DAP/17DAP0.987510.943
39DAP/27DAP0.987840.898
41DAP/39DAP1.367751
42DAP/41DAP1.148580.81
43DAP/42DAP0.89210.321
47DAP/43DAP1.095550.817
52DAP/47DAP1.043140.951
57DAP/52DAP1.118080.444
57DAP/7DAP1.125671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.920210.27
17DAP/reference0.862020.192
27DAP/reference0.905810.125
39DAP/reference1.079120.267
41DAP/reference1.112010.949
42DAP/reference1.155830.405
43DAP/reference0.980850.502
47DAP/reference0.953720.504
52DAP/reference0.954630.254
57DAP/reference1.094490.698

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.930270.441
17DAP/reference1.200910.311
27DAP/reference1.167680.131
39DAP/reference0.965550.428
41DAP/reference0.923940.322
42DAP/reference1.009150.723
43DAP/reference0.991640.748
47DAP/reference1.115410.274
52DAP/reference0.816650.203
57DAP/reference0.846670.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137150.146
17DAP/reference1.031990.641
27DAP/reference1.042391
39DAP/reference1.102050.235
41DAP/reference1.123520.028
42DAP/reference1.046410.818
43DAP/reference1.091890.617
47DAP/reference1.426950.009
52DAP/reference0.909420.433
57DAP/reference1.60560.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.89671
26DAP/20DAP1.626270.099
34DAP/26DAP0.959340.917
51DAP/34DAP1.443370.047
52DAP/51DAP0.922541
53DAP/52DAP1.278
55DAP/53DAP0.737910.176
57DAP/55DAP0.929190.647
62DAP/57DAP0.709540.05
68DAP/62DAP0.925110.7
68DAP/14DAP2.129140.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.495030.162

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.188210.067
Mature Green Tomato/Ripe Tomato1.206860.437
Immature Eggplant/Mature Eggplant0.762990.077
Ripe Pepper/Ripe Tomato3.509031
Mature Eggplant/Ripe Tomato0.551960.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.070271
1-1-2/M821.194150.977
12-2/M821.11951
12-4/M821.118451
1-3/M821.183330.479
2-1-1/M820.945411
2-1/M820.946280.519
2-6/M821.359860.374
3-2/M820.949270.752
4-1-1/M821.155961
4-1/M821.094031
4-3-2/M821.272910.508
4-3/M821.451981
5-3/M820.851530.447
6-2/M821.16666
6-3/M820.886950.982
7-1/M821.012171
7-2/M821.11610.385
9-3-2/M821.366711

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.170450.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.983181
DC3000/delta hrp 6h0.959870.95
DC3000/delta hrp 12h1.084611
DC3000/delta hrp 24h0.789390.038

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.261510.042
DC3000 delta B/DC3000 delta AB1.345910.105

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.862461
Exp 36h1.026741
Exp 60h0.9840.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.990341
Var 0h0.821461
Var 12h I row2-row11.040881
Var 12h NI row2-row11.104711
Var 36h I row2-row11.045831
Var 36h NI row2-row10.925730.645
Var 60h I row2-row10.715640.293
Var 60h NI row2-row11.045381
Time course 0hI-0hNI0.960570.798
Time course 12hI-12hNI1.096660.467
Time course 36hI-36hNI1.334430.005
Time course 60hI-60hNI1.708530.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.014220.921
transgenic ySAMdc/azygous control (breaker)0.908720.173
transgenic ySAMdc/azygous control (red)1.652450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.482640.041

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.745160.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.488090.083
Manapal/WT (break)1.860430.183
Manapal/WT (red)1.792310.142