Expression of 1-1-5.1.11.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.067650.755
27DAP/17DAP1.136680.866
39DAP/27DAP0.893850.549
41DAP/39DAP1.162710.511
42DAP/41DAP1.063581
43DAP/42DAP1.006870.937
47DAP/43DAP1.038620.979
52DAP/47DAP1.104080.906
57DAP/52DAP1.023941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.010771
17DAP/reference1.057070.089
27DAP/reference1.038150.529
39DAP/reference1.054790.236
41DAP/reference1.080180.102
42DAP/reference0.955260.139
43DAP/reference1.042650.34
47DAP/reference0.965350.279
52DAP/reference0.899770.202
57DAP/reference0.926310.156

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.971210.663
27DAP/17DAP0.955420.821
39DAP/27DAP1.076980.56
41DAP/39DAP1.023920.909
42DAP/41DAP0.991450.853
43DAP/42DAP1.052050.176
47DAP/43DAP1.006970.95
52DAP/47DAP0.987630.93
57DAP/52DAP0.927630.209
57DAP/7DAP0.971051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.095840.223
17DAP/reference1.047641
27DAP/reference1.003231
39DAP/reference1.035290.601
41DAP/reference0.957550.375
42DAP/reference0.895040.058
43DAP/reference0.828390.023
47DAP/reference0.912170.101
52DAP/reference1.030270.832
57DAP/reference0.97350.291

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.049120.559
17DAP/reference0.998690.83
27DAP/reference0.829070.129
39DAP/reference0.942520.404
41DAP/reference0.813340.057
42DAP/reference0.90780.169
43DAP/reference1.012970.892
47DAP/reference0.987410.5
52DAP/reference0.916260.093
57DAP/reference1.142160.057

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937770.29
17DAP/reference1.022261
27DAP/reference1.00050.883
39DAP/reference0.921170.222
41DAP/reference0.891470.293
42DAP/reference1.343920.556
43DAP/reference1.163181
47DAP/reference0.882990.259
52DAP/reference0.866190.223
57DAP/reference0.59070.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.984151
26DAP/20DAP0.924980.512
34DAP/26DAP1.003791
51DAP/34DAP0.943620.579
52DAP/51DAP1.011030.904
53DAP/52DAP0.998541
55DAP/53DAP1.038950.885
57DAP/55DAP1.097720.947
62DAP/57DAP0.976660.994
68DAP/62DAP1.105290.8
68DAP/14DAP0.878420.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.919620.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.061080.898
Immature Eggplant/Mature Eggplant1.068941
Ripe Pepper/Ripe Tomato1.11138
Mature Eggplant/Ripe Tomato0.950981

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.04949
1-1-2/M821.012371
12-2/M820.936850.535
12-4/M820.887250.619
1-3/M820.818790.441
2-1-1/M82N/AN/A
2-1/M820.93233
2-6/M821.031951
3-2/M820.956951
4-1-1/M820.99041
4-1/M820.998261
4-3-2/M820.89361
4-3/M820.722730.46
5-3/M820.967171
6-2/M821.06007
6-3/M821.26277
7-1/M821.11696
7-2/M821.029571
9-3-2/M820.879061

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.24840.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.784921
IL12-4/WTpooled1.004340.839
IL1-4/WTpooled0.82648
WT/WTpooled0.925081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.080940.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.997641
DC3000/delta hrp 6h3.741880.777
DC3000/delta hrp 12h0.991271
DC3000/delta hrp 24h1.100560.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.956420.568
DC3000 delta B/DC3000 delta AB0.994491

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.995051
Exp 36h1.151891
Exp 60h1.086111

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993861
Var 0h0.898961
Var 12h I row2-row11.143190.235
Var 12h NI row2-row10.963640.713
Var 36h I row2-row11.021251
Var 36h NI row2-row10.923490.549
Var 60h I row2-row11.193411
Var 60h NI row2-row11.215960.904
Time course 0hI-0hNI1.045740.852
Time course 12hI-12hNI0.98010.814
Time course 36hI-36hNI0.920630.132
Time course 60hI-60hNI0.876130.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.88540.314
transgenic ySAMdc/azygous control (breaker)0.688610.173
transgenic ySAMdc/azygous control (red)0.96011

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.019280.448

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.017491

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.915711
Manapal/WT (break)0.625680.333
Manapal/WT (red)1.023291