Expression of 1-1-5.1.11.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06765 | 0.755 |
27DAP/17DAP | 1.13668 | 0.866 |
39DAP/27DAP | 0.89385 | 0.549 |
41DAP/39DAP | 1.16271 | 0.511 |
42DAP/41DAP | 1.06358 | 1 |
43DAP/42DAP | 1.00687 | 0.937 |
47DAP/43DAP | 1.03862 | 0.979 |
52DAP/47DAP | 1.10408 | 0.906 |
57DAP/52DAP | 1.02394 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01077 | 1 |
17DAP/reference | 1.05707 | 0.089 |
27DAP/reference | 1.03815 | 0.529 |
39DAP/reference | 1.05479 | 0.236 |
41DAP/reference | 1.08018 | 0.102 |
42DAP/reference | 0.95526 | 0.139 |
43DAP/reference | 1.04265 | 0.34 |
47DAP/reference | 0.96535 | 0.279 |
52DAP/reference | 0.89977 | 0.202 |
57DAP/reference | 0.92631 | 0.156 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97121 | 0.663 |
27DAP/17DAP | 0.95542 | 0.821 |
39DAP/27DAP | 1.07698 | 0.56 |
41DAP/39DAP | 1.02392 | 0.909 |
42DAP/41DAP | 0.99145 | 0.853 |
43DAP/42DAP | 1.05205 | 0.176 |
47DAP/43DAP | 1.00697 | 0.95 |
52DAP/47DAP | 0.98763 | 0.93 |
57DAP/52DAP | 0.92763 | 0.209 |
57DAP/7DAP | 0.97105 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09584 | 0.223 |
17DAP/reference | 1.04764 | 1 |
27DAP/reference | 1.00323 | 1 |
39DAP/reference | 1.03529 | 0.601 |
41DAP/reference | 0.95755 | 0.375 |
42DAP/reference | 0.89504 | 0.058 |
43DAP/reference | 0.82839 | 0.023 |
47DAP/reference | 0.91217 | 0.101 |
52DAP/reference | 1.03027 | 0.832 |
57DAP/reference | 0.9735 | 0.291 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04912 | 0.559 |
17DAP/reference | 0.99869 | 0.83 |
27DAP/reference | 0.82907 | 0.129 |
39DAP/reference | 0.94252 | 0.404 |
41DAP/reference | 0.81334 | 0.057 |
42DAP/reference | 0.9078 | 0.169 |
43DAP/reference | 1.01297 | 0.892 |
47DAP/reference | 0.98741 | 0.5 |
52DAP/reference | 0.91626 | 0.093 |
57DAP/reference | 1.14216 | 0.057 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93777 | 0.29 |
17DAP/reference | 1.02226 | 1 |
27DAP/reference | 1.0005 | 0.883 |
39DAP/reference | 0.92117 | 0.222 |
41DAP/reference | 0.89147 | 0.293 |
42DAP/reference | 1.34392 | 0.556 |
43DAP/reference | 1.16318 | 1 |
47DAP/reference | 0.88299 | 0.259 |
52DAP/reference | 0.86619 | 0.223 |
57DAP/reference | 0.5907 | 0.032 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98415 | 1 |
26DAP/20DAP | 0.92498 | 0.512 |
34DAP/26DAP | 1.00379 | 1 |
51DAP/34DAP | 0.94362 | 0.579 |
52DAP/51DAP | 1.01103 | 0.904 |
53DAP/52DAP | 0.99854 | 1 |
55DAP/53DAP | 1.03895 | 0.885 |
57DAP/55DAP | 1.09772 | 0.947 |
62DAP/57DAP | 0.97666 | 0.994 |
68DAP/62DAP | 1.10529 | 0.8 |
68DAP/14DAP | 0.87842 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91962 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.06108 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.06894 | 1 |
Ripe Pepper/Ripe Tomato | 1.11138 | |
Mature Eggplant/Ripe Tomato | 0.95098 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04949 | |
1-1-2/M82 | 1.01237 | 1 |
12-2/M82 | 0.93685 | 0.535 |
12-4/M82 | 0.88725 | 0.619 |
1-3/M82 | 0.81879 | 0.441 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 0.93233 | |
2-6/M82 | 1.03195 | 1 |
3-2/M82 | 0.95695 | 1 |
4-1-1/M82 | 0.9904 | 1 |
4-1/M82 | 0.99826 | 1 |
4-3-2/M82 | 0.8936 | 1 |
4-3/M82 | 0.72273 | 0.46 |
5-3/M82 | 0.96717 | 1 |
6-2/M82 | 1.06007 | |
6-3/M82 | 1.26277 | |
7-1/M82 | 1.11696 | |
7-2/M82 | 1.02957 | 1 |
9-3-2/M82 | 0.87906 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.2484 | 0.531 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.78492 | 1 |
IL12-4/WTpooled | 1.00434 | 0.839 |
IL1-4/WTpooled | 0.82648 | |
WT/WTpooled | 0.92508 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08094 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99764 | 1 |
DC3000/delta hrp 6h | 3.74188 | 0.777 |
DC3000/delta hrp 12h | 0.99127 | 1 |
DC3000/delta hrp 24h | 1.10056 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95642 | 0.568 |
DC3000 delta B/DC3000 delta AB | 0.99449 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99505 | 1 |
Exp 36h | 1.15189 | 1 |
Exp 60h | 1.08611 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99386 | 1 |
Var 0h | 0.89896 | 1 |
Var 12h I row2-row1 | 1.14319 | 0.235 |
Var 12h NI row2-row1 | 0.96364 | 0.713 |
Var 36h I row2-row1 | 1.02125 | 1 |
Var 36h NI row2-row1 | 0.92349 | 0.549 |
Var 60h I row2-row1 | 1.19341 | 1 |
Var 60h NI row2-row1 | 1.21596 | 0.904 |
Time course 0hI-0hNI | 1.04574 | 0.852 |
Time course 12hI-12hNI | 0.9801 | 0.814 |
Time course 36hI-36hNI | 0.92063 | 0.132 |
Time course 60hI-60hNI | 0.87613 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8854 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.68861 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.9601 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01928 | 0.448 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01749 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91571 | 1 |
Manapal/WT (break) | 0.62568 | 0.333 |
Manapal/WT (red) | 1.02329 | 1 |
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