Expression of 1-1-5.1.11.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.03350.997
27DAP/17DAP0.81170.381
39DAP/27DAP0.737330.397
41DAP/39DAP1.032511
42DAP/41DAP1.076970.949
43DAP/42DAP0.811160.708
47DAP/43DAP1.101770.659
52DAP/47DAP1.08840.973
57DAP/52DAP0.853720.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.025871
17DAP/reference1.270620.012
27DAP/reference0.990840.763
39DAP/reference1.127190.067
41DAP/reference1.224490.047
42DAP/reference0.918810.067
43DAP/reference1.123010.061
47DAP/reference0.900780.077
52DAP/reference0.849940.105
57DAP/reference0.772760.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.168950.34
27DAP/17DAP0.871010.363
39DAP/27DAP1.085890.541
41DAP/39DAP0.877170.372
42DAP/41DAP1.240250.687
43DAP/42DAP0.889870.308
47DAP/43DAP1.270940.456
52DAP/47DAP0.921680.702
57DAP/52DAP0.8020.328
57DAP/7DAP1.773161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.758470.078
17DAP/reference1.096920.297
27DAP/reference1.109370.088
39DAP/reference0.807530.083
41DAP/reference0.755740.111
42DAP/reference0.783970.09
43DAP/reference1.119980.569
47DAP/reference0.803350.066
52DAP/reference0.857740.15
57DAP/reference1.009330.804

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.064640.33
17DAP/reference1.04461
27DAP/reference0.859490.134
39DAP/reference0.924830.348
41DAP/reference0.789010.087
42DAP/reference0.871030.061
43DAP/reference1.222940.251
47DAP/reference0.979960.512
52DAP/reference1.019380.713
57DAP/reference1.282590.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.049290.963
17DAP/reference1.07340.699
27DAP/reference1.201260.248
39DAP/reference1.186770.163
41DAP/reference1.207320.257
42DAP/reference0.975250.671
43DAP/reference0.795050.15
47DAP/reference0.830570.249
52DAP/reference1.645010.393
57DAP/reference0.750230.087

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.108010.966
26DAP/20DAP0.714460.113
34DAP/26DAP1.88374
51DAP/34DAP2.017340.058
52DAP/51DAP0.861521
53DAP/52DAP1.216220.594
55DAP/53DAP1.057650.608
57DAP/55DAP1.14380.898
62DAP/57DAP1.08630.935
68DAP/62DAP0.894390.135
68DAP/14DAP0.784760.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.52880.369

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.907610.015
Immature Eggplant/Mature Eggplant1.86859
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.460461

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.418860.591
1-1-2/M820.852310.804
12-2/M821.35256
12-4/M821.130140.611
1-3/M820.881080.501
2-1-1/M821.042121
2-1/M82N/AN/A
2-6/M821.016741
3-2/M820.92713
4-1-1/M821.104511
4-1/M821.33017
4-3-2/M821.14054
4-3/M821.355121
5-3/M820.907710.642
6-2/M821.09031
6-3/M821.126351
7-1/M821.0238
7-2/M820.842990.57
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.33130.493
IL2-6/WTpooled0.768011
IL7-5/WTpooled0.68771
IL7-3/WTpooled0.878950.418
IL12-4/WTpooled0.866190.71
IL1-4/WTpooled1.035371
WT/WTpooled1.094221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.048391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.110690.921
DC3000/delta hrp 6h0.956660.95
DC3000/delta hrp 12h1.016821
DC3000/delta hrp 24h1.031630.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.270581

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020671
Var 0h0.884940.933
Var 12h I row2-row15.664890.544
Var 12h NI row2-row11.05981
Var 36h I row2-row11.091230.283
Var 36h NI row2-row10.545031
Var 60h I row2-row11.086371
Var 60h NI row2-row10.792150.866
Time course 0hI-0hNI0.894960.522
Time course 12hI-12hNI0.959820.82
Time course 36hI-36hNI0.9520.476
Time course 60hI-60hNI2.164060.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.989670.789
transgenic ySAMdc/azygous control (breaker)1.486240.162
transgenic ySAMdc/azygous control (red)1.105150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.96610.191

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.18680.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.124810.307
Manapal/WT (break)0.646130.333
Manapal/WT (red)0.819610.424