Expression of 1-1-5.1.11.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0335 | 0.997 |
27DAP/17DAP | 0.8117 | 0.381 |
39DAP/27DAP | 0.73733 | 0.397 |
41DAP/39DAP | 1.03251 | 1 |
42DAP/41DAP | 1.07697 | 0.949 |
43DAP/42DAP | 0.81116 | 0.708 |
47DAP/43DAP | 1.10177 | 0.659 |
52DAP/47DAP | 1.0884 | 0.973 |
57DAP/52DAP | 0.85372 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02587 | 1 |
17DAP/reference | 1.27062 | 0.012 |
27DAP/reference | 0.99084 | 0.763 |
39DAP/reference | 1.12719 | 0.067 |
41DAP/reference | 1.22449 | 0.047 |
42DAP/reference | 0.91881 | 0.067 |
43DAP/reference | 1.12301 | 0.061 |
47DAP/reference | 0.90078 | 0.077 |
52DAP/reference | 0.84994 | 0.105 |
57DAP/reference | 0.77276 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16895 | 0.34 |
27DAP/17DAP | 0.87101 | 0.363 |
39DAP/27DAP | 1.08589 | 0.541 |
41DAP/39DAP | 0.87717 | 0.372 |
42DAP/41DAP | 1.24025 | 0.687 |
43DAP/42DAP | 0.88987 | 0.308 |
47DAP/43DAP | 1.27094 | 0.456 |
52DAP/47DAP | 0.92168 | 0.702 |
57DAP/52DAP | 0.802 | 0.328 |
57DAP/7DAP | 1.77316 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.75847 | 0.078 |
17DAP/reference | 1.09692 | 0.297 |
27DAP/reference | 1.10937 | 0.088 |
39DAP/reference | 0.80753 | 0.083 |
41DAP/reference | 0.75574 | 0.111 |
42DAP/reference | 0.78397 | 0.09 |
43DAP/reference | 1.11998 | 0.569 |
47DAP/reference | 0.80335 | 0.066 |
52DAP/reference | 0.85774 | 0.15 |
57DAP/reference | 1.00933 | 0.804 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06464 | 0.33 |
17DAP/reference | 1.0446 | 1 |
27DAP/reference | 0.85949 | 0.134 |
39DAP/reference | 0.92483 | 0.348 |
41DAP/reference | 0.78901 | 0.087 |
42DAP/reference | 0.87103 | 0.061 |
43DAP/reference | 1.22294 | 0.251 |
47DAP/reference | 0.97996 | 0.512 |
52DAP/reference | 1.01938 | 0.713 |
57DAP/reference | 1.28259 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04929 | 0.963 |
17DAP/reference | 1.0734 | 0.699 |
27DAP/reference | 1.20126 | 0.248 |
39DAP/reference | 1.18677 | 0.163 |
41DAP/reference | 1.20732 | 0.257 |
42DAP/reference | 0.97525 | 0.671 |
43DAP/reference | 0.79505 | 0.15 |
47DAP/reference | 0.83057 | 0.249 |
52DAP/reference | 1.64501 | 0.393 |
57DAP/reference | 0.75023 | 0.087 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10801 | 0.966 |
26DAP/20DAP | 0.71446 | 0.113 |
34DAP/26DAP | 1.88374 | |
51DAP/34DAP | 2.01734 | 0.058 |
52DAP/51DAP | 0.86152 | 1 |
53DAP/52DAP | 1.21622 | 0.594 |
55DAP/53DAP | 1.05765 | 0.608 |
57DAP/55DAP | 1.1438 | 0.898 |
62DAP/57DAP | 1.0863 | 0.935 |
68DAP/62DAP | 0.89439 | 0.135 |
68DAP/14DAP | 0.78476 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.5288 | 0.369 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.90761 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.86859 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.46046 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.41886 | 0.591 |
1-1-2/M82 | 0.85231 | 0.804 |
12-2/M82 | 1.35256 | |
12-4/M82 | 1.13014 | 0.611 |
1-3/M82 | 0.88108 | 0.501 |
2-1-1/M82 | 1.04212 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01674 | 1 |
3-2/M82 | 0.92713 | |
4-1-1/M82 | 1.10451 | 1 |
4-1/M82 | 1.33017 | |
4-3-2/M82 | 1.14054 | |
4-3/M82 | 1.35512 | 1 |
5-3/M82 | 0.90771 | 0.642 |
6-2/M82 | 1.0903 | 1 |
6-3/M82 | 1.12635 | 1 |
7-1/M82 | 1.0238 | |
7-2/M82 | 0.84299 | 0.57 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.3313 | 0.493 |
IL2-6/WTpooled | 0.76801 | 1 |
IL7-5/WTpooled | 0.68771 | |
IL7-3/WTpooled | 0.87895 | 0.418 |
IL12-4/WTpooled | 0.86619 | 0.71 |
IL1-4/WTpooled | 1.03537 | 1 |
WT/WTpooled | 1.09422 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04839 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11069 | 0.921 |
DC3000/delta hrp 6h | 0.95666 | 0.95 |
DC3000/delta hrp 12h | 1.01682 | 1 |
DC3000/delta hrp 24h | 1.03163 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.27058 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02067 | 1 |
Var 0h | 0.88494 | 0.933 |
Var 12h I row2-row1 | 5.66489 | 0.544 |
Var 12h NI row2-row1 | 1.05981 | |
Var 36h I row2-row1 | 1.09123 | 0.283 |
Var 36h NI row2-row1 | 0.54503 | 1 |
Var 60h I row2-row1 | 1.08637 | 1 |
Var 60h NI row2-row1 | 0.79215 | 0.866 |
Time course 0hI-0hNI | 0.89496 | 0.522 |
Time course 12hI-12hNI | 0.95982 | 0.82 |
Time course 36hI-36hNI | 0.952 | 0.476 |
Time course 60hI-60hNI | 2.16406 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98967 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 1.48624 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.10515 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9661 | 0.191 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1868 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.12481 | 0.307 |
Manapal/WT (break) | 0.64613 | 0.333 |
Manapal/WT (red) | 0.81961 | 0.424 |
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