Expression of 1-1-5.1.11.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.312070.681
27DAP/17DAP1.473990.552
39DAP/27DAP1.494090.242
41DAP/39DAP0.629310.077
42DAP/41DAP1.277310.841
43DAP/42DAP1.16690.829
47DAP/43DAP1.398230.223
52DAP/47DAP1.165880.641
57DAP/52DAP1.142380.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.120990.35
17DAP/reference1.181250.053
27DAP/reference1.343120.032
39DAP/reference1.144760.368
41DAP/reference1.078960.365
42DAP/reference1.257020.001
43DAP/reference1.251780.083
47DAP/reference1.683850.001
52DAP/reference1.359750.01
57DAP/reference1.372590.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.11640.398
27DAP/17DAP1.074120.694
39DAP/27DAP0.968040.747
41DAP/39DAP0.977530.973
42DAP/41DAP1.059780.81
43DAP/42DAP1.124270.094
47DAP/43DAP0.982220.902
52DAP/47DAP1.105150.619
57DAP/52DAP1.041790.763
57DAP/7DAP1.345260.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934130.361
17DAP/reference1.116250.162
27DAP/reference1.127880.049
39DAP/reference1.329780.011
41DAP/reference1.05130.637
42DAP/reference1.093151
43DAP/reference1.565150.008
47DAP/reference1.825550.019
52DAP/reference1.202730.011
57DAP/reference1.521740.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.987760.736
17DAP/reference1.331680.02
27DAP/reference1.37610.025
39DAP/reference1.337120.013
41DAP/reference0.966710.277
42DAP/reference1.24060.013
43DAP/reference1.098080.647
47DAP/reference1.287060.01
52DAP/reference1.02240.761
57DAP/reference1.177890.104

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.794940.147
17DAP/reference1.000410.668
27DAP/reference1.128540.044
39DAP/reference1.078490.377
41DAP/reference1.207290.306
42DAP/reference1.78290.009
43DAP/reference1.537320.007
47DAP/reference1.979250.011
52DAP/reference2.255430.03
57DAP/reference2.453920.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.049161
26DAP/20DAP0.8310.205
34DAP/26DAP1.029851
51DAP/34DAP0.803140.106
52DAP/51DAP0.992561
53DAP/52DAP1.102040.552
55DAP/53DAP0.998580.925
57DAP/55DAP1.096190.865
62DAP/57DAP1.00890.994
68DAP/62DAP0.887660.505
68DAP/14DAP0.618050.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.986730.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.575160.058
Mature Green Tomato/Ripe Tomato0.637780.027
Immature Eggplant/Mature Eggplant0.597850.081
Ripe Pepper/Ripe Tomato0.382970.293
Mature Eggplant/Ripe Tomato0.639030.188

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.785280.613
1-1-2/M821.394191
12-2/M821.2971
12-4/M821.319771
1-3/M820.880380.378
2-1-1/M821.004931
2-1/M821.063321
2-6/M821.017511
3-2/M820.922120.752
4-1-1/M821.041151
4-1/M820.945841
4-3-2/M820.923330.698
4-3/M820.966950.46
5-3/M821.058381
6-2/M820.84440.481
6-3/M821.104291
7-1/M821.114960.598
7-2/M820.861390.388
9-3-2/M821.221181

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.859570.321
IL2-6/WTpooled0.96661
IL7-5/WTpooled1.043541
IL7-3/WTpooled1.60880.362
IL12-4/WTpooled1.200710.538
IL1-4/WTpooled1.328391
WT/WTpooled0.928041

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.93610.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.892021
DC3000/delta hrp 6h1.041371
DC3000/delta hrp 12h1.004151
DC3000/delta hrp 24h0.795960.041

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.252550.042
DC3000 delta B/DC3000 delta AB1.265940.146

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.95381
Exp 36h0.731790.471
Exp 60h0.741290.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.042871
Var 0h1.514471
Var 12h I row2-row11.026270.795
Var 12h NI row2-row10.903930.546
Var 36h I row2-row11.066040.298
Var 36h NI row2-row11.005531
Var 60h I row2-row11.128330.562
Var 60h NI row2-row11.076471
Time course 0hI-0hNI1.167470.227
Time course 12hI-12hNI1.026720.811
Time course 36hI-36hNI1.042640.316
Time course 60hI-60hNI0.753030.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.980690.614
transgenic ySAMdc/azygous control (breaker)0.902250.49
transgenic ySAMdc/azygous control (red)0.946871

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.155670.155

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.489510.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.629740.172
Manapal/WT (break)0.983131
Manapal/WT (red)1.13441