Expression of 1-1-5.1.11.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80576 | 0.159 |
27DAP/17DAP | 0.95927 | 0.947 |
39DAP/27DAP | 0.91783 | 0.608 |
41DAP/39DAP | 1.01837 | 1 |
42DAP/41DAP | 1.16639 | 0.933 |
43DAP/42DAP | 0.96018 | 0.89 |
47DAP/43DAP | 0.80844 | 0.424 |
52DAP/47DAP | 0.89442 | 0.736 |
57DAP/52DAP | 0.87803 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98338 | 0.63 |
17DAP/reference | 0.93944 | 0.091 |
27DAP/reference | 1.08923 | 0.271 |
39DAP/reference | 0.98449 | 0.762 |
41DAP/reference | 0.90054 | 0.154 |
42DAP/reference | 1.08385 | 0.252 |
43DAP/reference | 0.96212 | 0.555 |
47DAP/reference | 0.89276 | 0.035 |
52DAP/reference | 0.85159 | 0.077 |
57DAP/reference | 1.12029 | 0.202 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17122 | 0.213 |
27DAP/17DAP | 0.96427 | 0.878 |
39DAP/27DAP | 0.98965 | 0.977 |
41DAP/39DAP | 1.24099 | 0.748 |
42DAP/41DAP | 0.9589 | 0.704 |
43DAP/42DAP | 0.8194 | 0.041 |
47DAP/43DAP | 0.93987 | 0.588 |
52DAP/47DAP | 1.05819 | 0.819 |
57DAP/52DAP | 1.04222 | 0.832 |
57DAP/7DAP | 1.11456 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9234 | 0.27 |
17DAP/reference | 0.92122 | 0.124 |
27DAP/reference | 1.00938 | 1 |
39DAP/reference | 0.88092 | 0.043 |
41DAP/reference | 0.83616 | 0.09 |
42DAP/reference | 0.89541 | 0.169 |
43DAP/reference | 0.90495 | 0.126 |
47DAP/reference | 1.15619 | 0.43 |
52DAP/reference | 0.7817 | 0.019 |
57DAP/reference | 0.91325 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06594 | 0.67 |
17DAP/reference | 0.83585 | 0.075 |
27DAP/reference | 1.06992 | 0.888 |
39DAP/reference | 1.09523 | 0.602 |
41DAP/reference | 0.95551 | 0.364 |
42DAP/reference | 1.03746 | 1 |
43DAP/reference | 0.89009 | 0.212 |
47DAP/reference | 1.11379 | 0.218 |
52DAP/reference | 1.01529 | 1 |
57DAP/reference | 0.85897 | 0.092 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92548 | 0.335 |
17DAP/reference | 0.92362 | 0.398 |
27DAP/reference | 0.85951 | 0.089 |
39DAP/reference | 0.917 | 0.222 |
41DAP/reference | 0.93272 | 0.293 |
42DAP/reference | 0.9866 | 0.816 |
43DAP/reference | 0.80943 | 0.023 |
47DAP/reference | 0.96867 | 0.478 |
52DAP/reference | 1.03393 | 0.946 |
57DAP/reference | 1.0058 | 0.779 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89639 | 0.997 |
26DAP/20DAP | 2.73458 | 0.156 |
34DAP/26DAP | 0.7492 | 0.399 |
51DAP/34DAP | 1.58486 | 0.121 |
52DAP/51DAP | 1.0158 | 0.904 |
53DAP/52DAP | 1.10124 | 0.398 |
55DAP/53DAP | 0.81994 | 0.03 |
57DAP/55DAP | 1.11916 | 1 |
62DAP/57DAP | 0.9081 | 0.681 |
68DAP/62DAP | 1.65121 | 0.039 |
68DAP/14DAP | 2.98655 | 0.027 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.86646 | 0.322 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.71762 | 0.232 |
Mature Green Tomato/Ripe Tomato | 8.65591 | 0.166 |
Immature Eggplant/Mature Eggplant | 1.5347 | 0.15 |
Ripe Pepper/Ripe Tomato | 1.54264 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.41197 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87911 | 0.944 |
1-1-2/M82 | 1.16456 | 1 |
12-2/M82 | 1.16243 | 1 |
12-4/M82 | 0.92304 | 1 |
1-3/M82 | 1.90507 | 0.479 |
2-1-1/M82 | 0.98279 | 1 |
2-1/M82 | 1.05651 | 1 |
2-6/M82 | 0.6153 | 0.501 |
3-2/M82 | 1.13553 | 0.463 |
4-1-1/M82 | 1.31526 | |
4-1/M82 | 1.30151 | |
4-3-2/M82 | 1.08587 | 1 |
4-3/M82 | 0.90474 | 0.72 |
5-3/M82 | 1.17083 | 0.572 |
6-2/M82 | 1.41663 | 0.253 |
6-3/M82 | 1.11993 | 1 |
7-1/M82 | 0.97585 | 1 |
7-2/M82 | 1.17631 | 0.324 |
9-3-2/M82 | 1.14865 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.29741 | 0.277 |
IL2-6/WTpooled | 0.94149 | 1 |
IL7-5/WTpooled | 1.38611 | 0.792 |
IL7-3/WTpooled | 1.18085 | 1 |
IL12-4/WTpooled | 1.14961 | 0.513 |
IL1-4/WTpooled | 1.13686 | 0.426 |
WT/WTpooled | 0.989 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14688 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.8528 | 0.734 |
DC3000/delta hrp 6h | 0.87345 | 0.95 |
DC3000/delta hrp 12h | 0.88976 | 1 |
DC3000/delta hrp 24h | 1.04398 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0663 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.15807 | 0.212 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.85771 | 1 |
Exp 36h | 1.72735 | 1 |
Exp 60h | 1.43982 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03709 | 1 |
Var 0h | 0.60983 | 1 |
Var 12h I row2-row1 | 1.09632 | 0.613 |
Var 12h NI row2-row1 | 1.06363 | 1 |
Var 36h I row2-row1 | 1.06437 | 1 |
Var 36h NI row2-row1 | 1.0266 | 1 |
Var 60h I row2-row1 | 0.83959 | 0.292 |
Var 60h NI row2-row1 | 1.07755 | 0.904 |
Time course 0hI-0hNI | 0.93058 | 0.618 |
Time course 12hI-12hNI | 1.17117 | 0.467 |
Time course 36hI-36hNI | 1.11662 | 0.128 |
Time course 60hI-60hNI | 1.61649 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97304 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 0.72203 | 0.129 |
transgenic ySAMdc/azygous control (red) | 1.01786 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.27105 | 0.086 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.80542 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.40884 | 0.307 |
Manapal/WT (break) | 1.03517 | 1 |
Manapal/WT (red) | 0.82775 | 0.216 |
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