Expression of 1-1-5.1.12.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.159650.315
27DAP/17DAP1.042540.883
39DAP/27DAP1.367380.52
41DAP/39DAP0.969950.857
42DAP/41DAP1.087621
43DAP/42DAP0.958650.776
47DAP/43DAP1.046450.999
52DAP/47DAP1.335750.398
57DAP/52DAP0.999740.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.261780.04
17DAP/reference1.447090.023
27DAP/reference1.559570.043
39DAP/reference1.5490.108
41DAP/reference1.431640.062
42DAP/reference1.650080.001
43DAP/reference1.758450.006
47DAP/reference2.549480.001
52DAP/reference1.343630.167
57DAP/reference1.708740.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.178350.372
27DAP/17DAP1.020471
39DAP/27DAP1.00091
41DAP/39DAP1.127930.853
42DAP/41DAP0.949940.591
43DAP/42DAP0.92160.399
47DAP/43DAP0.915930.476
52DAP/47DAP1.095230.73
57DAP/52DAP1.136720.33
57DAP/7DAP1.298080.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.981520.55
17DAP/reference0.953330.144
27DAP/reference0.906540.037
39DAP/reference1.138760.351
41DAP/reference1.090990.491
42DAP/reference1.047930.405
43DAP/reference0.927930.175
47DAP/reference1.258480.067
52DAP/reference0.888210.097
57DAP/reference1.05370.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.142020.41
17DAP/reference1.688890.01
27DAP/reference1.402910.013
39DAP/reference1.454730.015
41DAP/reference1.15730.199
42DAP/reference1.299270.024
43DAP/reference1.685230.011
47DAP/reference1.334090.063
52DAP/reference1.153810.057
57DAP/reference1.210510.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.919380.249
17DAP/reference1.266210.384
27DAP/reference0.869740.089
39DAP/reference0.889340.122
41DAP/reference1.310190.796
42DAP/reference1.295460.251
43DAP/reference1.440850.241
47DAP/reference2.830130.017
52DAP/reference1.198890.614
57DAP/reference1.60390.113

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.097610.966
26DAP/20DAP1.204410.361
34DAP/26DAP1.116971
51DAP/34DAP0.95430.727
52DAP/51DAP1.110040.439
53DAP/52DAP1.296840.187
55DAP/53DAP0.825230.019
57DAP/55DAP1.081350.915
62DAP/57DAP0.70590.05
68DAP/62DAP0.832210.609
68DAP/14DAP1.353740.714

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.980490.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.54683
Mature Green Tomato/Ripe Tomato0.842080.317
Immature Eggplant/Mature Eggplant0.520320.063
Ripe Pepper/Ripe Tomato0.079370.224
Mature Eggplant/Ripe Tomato0.542230.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.986790.961
1-1-2/M821.048991
12-2/M820.769440.692
12-4/M820.970071
1-3/M821.003661
2-1-1/M821.01470.764
2-1/M820.769870.325
2-6/M821.027651
3-2/M820.972251
4-1-1/M821.014091
4-1/M821.121681
4-3-2/M821.262780.508
4-3/M821.272431
5-3/M820.872810.49
6-2/M820.720280.497
6-3/M820.985131
7-1/M821.010511
7-2/M821.087461
9-3-2/M821.039641

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.989081

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.013360.921
DC3000/delta hrp 6h0.832090.95
DC3000/delta hrp 12h0.958281
DC3000/delta hrp 24h0.9610.75

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.390410.384
DC3000 delta B/DC3000 delta AB1.164610.243

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.122861
Exp 36h1.029421
Exp 60h1.013691

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.021311
Var 0h0.924571
Var 12h I row2-row11.073090.692
Var 12h NI row2-row10.932390.494
Var 36h I row2-row11.400220.908
Var 36h NI row2-row10.960370.743
Var 60h I row2-row10.874990.439
Var 60h NI row2-row11.050881
Time course 0hI-0hNI1.013171
Time course 12hI-12hNI1.110120.275
Time course 36hI-36hNI1.18740.019
Time course 60hI-60hNI1.139020.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.861550.291
transgenic ySAMdc/azygous control (breaker)0.883070.49
transgenic ySAMdc/azygous control (red)0.952031

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.02340.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.710640.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.856331
Manapal/WT (break)1.141150.381
Manapal/WT (red)1.215890.164