Expression of 1-1-5.1.12.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15965 | 0.315 |
27DAP/17DAP | 1.04254 | 0.883 |
39DAP/27DAP | 1.36738 | 0.52 |
41DAP/39DAP | 0.96995 | 0.857 |
42DAP/41DAP | 1.08762 | 1 |
43DAP/42DAP | 0.95865 | 0.776 |
47DAP/43DAP | 1.04645 | 0.999 |
52DAP/47DAP | 1.33575 | 0.398 |
57DAP/52DAP | 0.99974 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26178 | 0.04 |
17DAP/reference | 1.44709 | 0.023 |
27DAP/reference | 1.55957 | 0.043 |
39DAP/reference | 1.549 | 0.108 |
41DAP/reference | 1.43164 | 0.062 |
42DAP/reference | 1.65008 | 0.001 |
43DAP/reference | 1.75845 | 0.006 |
47DAP/reference | 2.54948 | 0.001 |
52DAP/reference | 1.34363 | 0.167 |
57DAP/reference | 1.70874 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17835 | 0.372 |
27DAP/17DAP | 1.02047 | 1 |
39DAP/27DAP | 1.0009 | 1 |
41DAP/39DAP | 1.12793 | 0.853 |
42DAP/41DAP | 0.94994 | 0.591 |
43DAP/42DAP | 0.9216 | 0.399 |
47DAP/43DAP | 0.91593 | 0.476 |
52DAP/47DAP | 1.09523 | 0.73 |
57DAP/52DAP | 1.13672 | 0.33 |
57DAP/7DAP | 1.29808 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98152 | 0.55 |
17DAP/reference | 0.95333 | 0.144 |
27DAP/reference | 0.90654 | 0.037 |
39DAP/reference | 1.13876 | 0.351 |
41DAP/reference | 1.09099 | 0.491 |
42DAP/reference | 1.04793 | 0.405 |
43DAP/reference | 0.92793 | 0.175 |
47DAP/reference | 1.25848 | 0.067 |
52DAP/reference | 0.88821 | 0.097 |
57DAP/reference | 1.0537 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14202 | 0.41 |
17DAP/reference | 1.68889 | 0.01 |
27DAP/reference | 1.40291 | 0.013 |
39DAP/reference | 1.45473 | 0.015 |
41DAP/reference | 1.1573 | 0.199 |
42DAP/reference | 1.29927 | 0.024 |
43DAP/reference | 1.68523 | 0.011 |
47DAP/reference | 1.33409 | 0.063 |
52DAP/reference | 1.15381 | 0.057 |
57DAP/reference | 1.21051 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91938 | 0.249 |
17DAP/reference | 1.26621 | 0.384 |
27DAP/reference | 0.86974 | 0.089 |
39DAP/reference | 0.88934 | 0.122 |
41DAP/reference | 1.31019 | 0.796 |
42DAP/reference | 1.29546 | 0.251 |
43DAP/reference | 1.44085 | 0.241 |
47DAP/reference | 2.83013 | 0.017 |
52DAP/reference | 1.19889 | 0.614 |
57DAP/reference | 1.6039 | 0.113 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09761 | 0.966 |
26DAP/20DAP | 1.20441 | 0.361 |
34DAP/26DAP | 1.11697 | 1 |
51DAP/34DAP | 0.9543 | 0.727 |
52DAP/51DAP | 1.11004 | 0.439 |
53DAP/52DAP | 1.29684 | 0.187 |
55DAP/53DAP | 0.82523 | 0.019 |
57DAP/55DAP | 1.08135 | 0.915 |
62DAP/57DAP | 0.7059 | 0.05 |
68DAP/62DAP | 0.83221 | 0.609 |
68DAP/14DAP | 1.35374 | 0.714 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.98049 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.54683 | |
Mature Green Tomato/Ripe Tomato | 0.84208 | 0.317 |
Immature Eggplant/Mature Eggplant | 0.52032 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.07937 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.54223 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98679 | 0.961 |
1-1-2/M82 | 1.04899 | 1 |
12-2/M82 | 0.76944 | 0.692 |
12-4/M82 | 0.97007 | 1 |
1-3/M82 | 1.00366 | 1 |
2-1-1/M82 | 1.0147 | 0.764 |
2-1/M82 | 0.76987 | 0.325 |
2-6/M82 | 1.02765 | 1 |
3-2/M82 | 0.97225 | 1 |
4-1-1/M82 | 1.01409 | 1 |
4-1/M82 | 1.12168 | 1 |
4-3-2/M82 | 1.26278 | 0.508 |
4-3/M82 | 1.27243 | 1 |
5-3/M82 | 0.87281 | 0.49 |
6-2/M82 | 0.72028 | 0.497 |
6-3/M82 | 0.98513 | 1 |
7-1/M82 | 1.01051 | 1 |
7-2/M82 | 1.08746 | 1 |
9-3-2/M82 | 1.03964 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98908 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01336 | 0.921 |
DC3000/delta hrp 6h | 0.83209 | 0.95 |
DC3000/delta hrp 12h | 0.95828 | 1 |
DC3000/delta hrp 24h | 0.961 | 0.75 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.39041 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.16461 | 0.243 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12286 | 1 |
Exp 36h | 1.02942 | 1 |
Exp 60h | 1.01369 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02131 | 1 |
Var 0h | 0.92457 | 1 |
Var 12h I row2-row1 | 1.07309 | 0.692 |
Var 12h NI row2-row1 | 0.93239 | 0.494 |
Var 36h I row2-row1 | 1.40022 | 0.908 |
Var 36h NI row2-row1 | 0.96037 | 0.743 |
Var 60h I row2-row1 | 0.87499 | 0.439 |
Var 60h NI row2-row1 | 1.05088 | 1 |
Time course 0hI-0hNI | 1.01317 | 1 |
Time course 12hI-12hNI | 1.11012 | 0.275 |
Time course 36hI-36hNI | 1.1874 | 0.019 |
Time course 60hI-60hNI | 1.13902 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86155 | 0.291 |
transgenic ySAMdc/azygous control (breaker) | 0.88307 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.95203 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0234 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71064 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.85633 | 1 |
Manapal/WT (break) | 1.14115 | 0.381 |
Manapal/WT (red) | 1.21589 | 0.164 |
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