Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.12.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.99423	0.303
27DAP/17DAP	1.23388	0.849
39DAP/27DAP	1.54343	0.626
41DAP/39DAP	1.10261	0.887
42DAP/41DAP	1.31511	0.595
43DAP/42DAP	1.39773	1
47DAP/43DAP	0.76819	0.33
52DAP/47DAP	1.43337	0.53
57DAP/52DAP	1.26966	0.993

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.47831	0.303
17DAP/reference	0.81838
27DAP/reference	1.16097	0.934
39DAP/reference	0.54317	0.1
41DAP/reference	1.23801	0.265
42DAP/reference	1.00907	1
43DAP/reference	1.07292	0.924
47DAP/reference	1.36846	0.001
52DAP/reference	N/A	N/A
57DAP/reference	1.19555

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.56362
27DAP/17DAP	0.85377
39DAP/27DAP	5.68873	0.016
41DAP/39DAP	0.3804
42DAP/41DAP	0.88328
43DAP/42DAP	N/A	N/A
47DAP/43DAP	0.72709	0.05
52DAP/47DAP	0.74501	0.186
57DAP/52DAP	0.46778
57DAP/7DAP	0.73899

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.20079	0.292
17DAP/reference	1.08528	0.971
27DAP/reference	0.87541	0.076
39DAP/reference	0.95173	0.354
41DAP/reference	0.92335	0.259
42DAP/reference	1.1323	0.686
43DAP/reference	1.15432	0.167
47DAP/reference	1.03437	1
52DAP/reference	1.13877	0.636
57DAP/reference	1.24765	0.082

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.82957	0.176
17DAP/reference	1.2895	0.156
27DAP/reference	1.2657	0.629
39DAP/reference	N/A	N/A
41DAP/reference	0.48391	0.005
42DAP/reference	0.81071
43DAP/reference	1.15333	0.562
47DAP/reference	N/A	N/A
52DAP/reference	1.02949
57DAP/reference	1.78181

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94982	0.23
17DAP/reference	1.05612	0.65
27DAP/reference	0.85746	0.218
39DAP/reference	0.9532	0.328
41DAP/reference	1.19328	0.383
42DAP/reference	0.97271	0.671
43DAP/reference	0.95959	0.545
47DAP/reference	1.09385	0.228
52DAP/reference	0.98715	0.838
57DAP/reference	0.89196

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.31896	0.966
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.12403	1
51DAP/34DAP	2.0363	0.281
52DAP/51DAP	2.17891
53DAP/52DAP	0.80447	0.612
55DAP/53DAP	1.45205	0.054
57DAP/55DAP	1.9767	0.997
62DAP/57DAP	1.53949
68DAP/62DAP	3.17757
68DAP/14DAP	1.43965

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.98826	0.665

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.92468	0.247
IL2-6/WTpooled	1.05797	1
IL7-5/WTpooled	0.65521	1
IL7-3/WTpooled	0.97662	1
IL12-4/WTpooled	0.90533	1
IL1-4/WTpooled	0.90047	0.415
WT/WTpooled	0.93069	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	0.22287
DC3000/delta hrp 12h	1.11072	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.97616	1
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.1968	0.123
Manapal/WT (red)	N/A	N/A