Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.12.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	3.70057	0.153
27DAP/17DAP	0.94989	0.982
39DAP/27DAP	0.91551	0.663
41DAP/39DAP	0.95316	0.866
42DAP/41DAP	1.02967	1
43DAP/42DAP	0.98548	0.932
47DAP/43DAP	1.21448	0.909
52DAP/47DAP	1.3697	0.487
57DAP/52DAP	1.01486	0.974

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.34756
17DAP/reference	N/A	N/A
27DAP/reference	N/A	N/A
39DAP/reference	0.99531
41DAP/reference	1.19642
42DAP/reference	1.71079
43DAP/reference	N/A	N/A
47DAP/reference	1.71437	0.003
52DAP/reference	N/A	N/A
57DAP/reference	0.39217

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.19109
27DAP/17DAP	2.27062
39DAP/27DAP	1.77738
41DAP/39DAP	2.32249
42DAP/41DAP	N/A	N/A
43DAP/42DAP	1.15592	0.627
47DAP/43DAP	1.02931	0.99
52DAP/47DAP	N/A	N/A
57DAP/52DAP	0.5051
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.25232	0.16
17DAP/reference	1.14555	0.123
27DAP/reference	0.78888	0.01
39DAP/reference	0.7214	0.012
41DAP/reference	0.78821	0.05
42DAP/reference	0.79795	0.016
43DAP/reference	0.59816	0.016
47DAP/reference	0.68282	0.026
52DAP/reference	0.69021	0.013
57DAP/reference	0.70882	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07243	0.719
17DAP/reference	1.11969
27DAP/reference	0.5562
39DAP/reference	N/A	N/A
41DAP/reference	0.58613
42DAP/reference	0.8384
43DAP/reference	0.95767	0.592
47DAP/reference	0.78347
52DAP/reference	N/A	N/A
57DAP/reference	0.65469

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.46681	0.017
17DAP/reference	1.57324	0.125
27DAP/reference	0.75929	0.041
39DAP/reference	1.01734	1
41DAP/reference	0.94352	0.371
42DAP/reference	0.63347	0.02
43DAP/reference	0.66167	0.016
47DAP/reference	1.56319	0.034
52DAP/reference	0.64732	0.082
57DAP/reference	0.97335

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.16804	0.966
26DAP/20DAP	0.70309	0.512
34DAP/26DAP	2.28573	0.819
51DAP/34DAP	1.32528	0.303
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.14756	0.537
55DAP/53DAP	0.92875	0.544
57DAP/55DAP	1.22079	0.969
62DAP/57DAP	N/A	N/A
68DAP/62DAP	2.47241
68DAP/14DAP	1.10865	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.54612	0.243
IL2-6/WTpooled	1.03412	1
IL7-5/WTpooled	0.94671	1
IL7-3/WTpooled	0.64417	0.418
IL12-4/WTpooled	0.93214	1
IL1-4/WTpooled	0.90406	0.834
WT/WTpooled	0.97521	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	0.55379
DC3000/delta hrp 12h	1.08474	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.10957	0.936
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.419	0.137