Expression of 1-1-5.1.13.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91562 | 0.543 |
27DAP/17DAP | 0.9349 | 0.877 |
39DAP/27DAP | 0.82507 | 0.529 |
41DAP/39DAP | 1.28211 | 0.293 |
42DAP/41DAP | 1.20498 | 0.926 |
43DAP/42DAP | 0.92062 | 0.813 |
47DAP/43DAP | 1.05041 | 0.746 |
52DAP/47DAP | 1.64599 | 0.31 |
57DAP/52DAP | 1.02314 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00803 | 0.771 |
17DAP/reference | 0.99934 | 1 |
27DAP/reference | 0.97226 | 0.538 |
39DAP/reference | 1.30713 | 0.423 |
41DAP/reference | 0.98056 | 0.814 |
42DAP/reference | 0.99562 | 0.547 |
43DAP/reference | 1.03252 | 0.705 |
47DAP/reference | 0.99339 | 0.602 |
52DAP/reference | 0.85574 | 0.075 |
57DAP/reference | 0.91251 | 0.131 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99998 | 0.899 |
27DAP/17DAP | 1.0331 | 0.924 |
39DAP/27DAP | 0.99908 | 1 |
41DAP/39DAP | 1.12673 | 0.799 |
42DAP/41DAP | 1.07255 | 0.593 |
43DAP/42DAP | 0.96017 | 0.538 |
47DAP/43DAP | 0.95725 | 0.687 |
52DAP/47DAP | 1.04701 | 0.819 |
57DAP/52DAP | 1.03352 | 0.806 |
57DAP/7DAP | 1.31069 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96788 | 0.326 |
17DAP/reference | 0.94601 | 0.011 |
27DAP/reference | 0.9427 | 0.031 |
39DAP/reference | 0.98056 | 0.17 |
41DAP/reference | 0.94105 | 0.146 |
42DAP/reference | 0.99042 | 0.582 |
43DAP/reference | 0.97664 | 0.48 |
47DAP/reference | 1.04145 | 0.659 |
52DAP/reference | 0.9273 | 0.196 |
57DAP/reference | 0.93651 | 0.069 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08617 | 0.22 |
17DAP/reference | 1.00996 | 0.999 |
27DAP/reference | 0.96639 | 0.393 |
39DAP/reference | 0.98323 | 0.526 |
41DAP/reference | 0.88434 | 0.081 |
42DAP/reference | 1.00235 | 1 |
43DAP/reference | 1.14734 | 0.195 |
47DAP/reference | 1.03141 | 0.513 |
52DAP/reference | 0.95053 | 0.203 |
57DAP/reference | 1.00745 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08904 | 0.723 |
17DAP/reference | 1.1107 | 0.136 |
27DAP/reference | 0.84479 | 0.218 |
39DAP/reference | 0.93743 | 0.092 |
41DAP/reference | 0.96711 | 0.167 |
42DAP/reference | 0.95441 | 0.036 |
43DAP/reference | 0.95841 | 0.348 |
47DAP/reference | 1.01512 | 1 |
52DAP/reference | 0.95932 | 0.493 |
57DAP/reference | 1.05718 | 0.909 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95028 | 1 |
26DAP/20DAP | 0.89182 | 0.512 |
34DAP/26DAP | 0.95297 | 0.917 |
51DAP/34DAP | 0.82654 | 0.164 |
52DAP/51DAP | 0.94702 | 1 |
53DAP/52DAP | 1.03619 | 0.806 |
55DAP/53DAP | 1.01314 | 0.994 |
57DAP/55DAP | 1.08141 | 0.906 |
62DAP/57DAP | 1.07056 | 0.185 |
68DAP/62DAP | 1.15166 | 0.767 |
68DAP/14DAP | 0.92507 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07606 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9212 | 0.503 |
Mature Green Tomato/Ripe Tomato | 1.30046 | 0.69 |
Immature Eggplant/Mature Eggplant | 0.80396 | |
Ripe Pepper/Ripe Tomato | 0.86469 | 1 |
Mature Eggplant/Ripe Tomato | 1.308 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95074 | 0.883 |
1-1-2/M82 | 0.96237 | 1 |
12-2/M82 | 1.10986 | 1 |
12-4/M82 | 0.91027 | 1 |
1-3/M82 | 1.03 | 1 |
2-1-1/M82 | 1.05029 | 0.764 |
2-1/M82 | 1.30866 | 1 |
2-6/M82 | 0.92725 | 1 |
3-2/M82 | 0.94115 | 0.752 |
4-1-1/M82 | 1.05883 | 1 |
4-1/M82 | 1.00979 | 1 |
4-3-2/M82 | 0.88493 | 1 |
4-3/M82 | 1.11591 | 1 |
5-3/M82 | 1.04847 | 1 |
6-2/M82 | 1.06202 | 1 |
6-3/M82 | 1.03098 | 1 |
7-1/M82 | 0.94027 | 1 |
7-2/M82 | 1.03605 | 1 |
9-3-2/M82 | 0.8343 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.98527 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.0205 | 1 |
IL12-4/WTpooled | 1.10557 | 0.891 |
IL1-4/WTpooled | 0.89143 | |
WT/WTpooled | 1.04718 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91493 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93877 | 1 |
DC3000/delta hrp 6h | 0.90065 | 0.95 |
DC3000/delta hrp 12h | 1.1902 | 1 |
DC3000/delta hrp 24h | 0.89451 | 0.464 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17773 | 0.102 |
DC3000 delta B/DC3000 delta AB | 1.01898 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99892 | 1 |
Exp 36h | 1.55135 | 0.326 |
Exp 60h | 1.09586 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01575 | 1 |
Var 0h | 0.50663 | 1 |
Var 12h I row2-row1 | 1.17442 | 0.379 |
Var 12h NI row2-row1 | 0.92602 | 0.546 |
Var 36h I row2-row1 | 1.12929 | 1 |
Var 36h NI row2-row1 | 0.94386 | 0.791 |
Var 60h I row2-row1 | 1.38121 | 1 |
Var 60h NI row2-row1 | 1.39884 | 0.904 |
Time course 0hI-0hNI | 1.07894 | 0.764 |
Time course 12hI-12hNI | 1.10503 | 0.633 |
Time course 36hI-36hNI | 0.98151 | 0.533 |
Time course 60hI-60hNI | 1.13139 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.14528 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 0.69498 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.93246 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04945 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04173 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.70877 | 0.172 |
Manapal/WT (break) | 0.91165 | 1 |
Manapal/WT (red) | 0.58488 | 0.181 |
|
|