Expression of 1-1-5.1.13.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.915620.543
27DAP/17DAP0.93490.877
39DAP/27DAP0.825070.529
41DAP/39DAP1.282110.293
42DAP/41DAP1.204980.926
43DAP/42DAP0.920620.813
47DAP/43DAP1.050410.746
52DAP/47DAP1.645990.31
57DAP/52DAP1.023140.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008030.771
17DAP/reference0.999341
27DAP/reference0.972260.538
39DAP/reference1.307130.423
41DAP/reference0.980560.814
42DAP/reference0.995620.547
43DAP/reference1.032520.705
47DAP/reference0.993390.602
52DAP/reference0.855740.075
57DAP/reference0.912510.131

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.999980.899
27DAP/17DAP1.03310.924
39DAP/27DAP0.999081
41DAP/39DAP1.126730.799
42DAP/41DAP1.072550.593
43DAP/42DAP0.960170.538
47DAP/43DAP0.957250.687
52DAP/47DAP1.047010.819
57DAP/52DAP1.033520.806
57DAP/7DAP1.310691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.967880.326
17DAP/reference0.946010.011
27DAP/reference0.94270.031
39DAP/reference0.980560.17
41DAP/reference0.941050.146
42DAP/reference0.990420.582
43DAP/reference0.976640.48
47DAP/reference1.041450.659
52DAP/reference0.92730.196
57DAP/reference0.936510.069

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.086170.22
17DAP/reference1.009960.999
27DAP/reference0.966390.393
39DAP/reference0.983230.526
41DAP/reference0.884340.081
42DAP/reference1.002351
43DAP/reference1.147340.195
47DAP/reference1.031410.513
52DAP/reference0.950530.203
57DAP/reference1.007451

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.089040.723
17DAP/reference1.11070.136
27DAP/reference0.844790.218
39DAP/reference0.937430.092
41DAP/reference0.967110.167
42DAP/reference0.954410.036
43DAP/reference0.958410.348
47DAP/reference1.015121
52DAP/reference0.959320.493
57DAP/reference1.057180.909

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.950281
26DAP/20DAP0.891820.512
34DAP/26DAP0.952970.917
51DAP/34DAP0.826540.164
52DAP/51DAP0.947021
53DAP/52DAP1.036190.806
55DAP/53DAP1.013140.994
57DAP/55DAP1.081410.906
62DAP/57DAP1.070560.185
68DAP/62DAP1.151660.767
68DAP/14DAP0.925071

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.076060.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.92120.503
Mature Green Tomato/Ripe Tomato1.300460.69
Immature Eggplant/Mature Eggplant0.80396
Ripe Pepper/Ripe Tomato0.864691
Mature Eggplant/Ripe Tomato1.3081

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.950740.883
1-1-2/M820.962371
12-2/M821.109861
12-4/M820.910271
1-3/M821.031
2-1-1/M821.050290.764
2-1/M821.308661
2-6/M820.927251
3-2/M820.941150.752
4-1-1/M821.058831
4-1/M821.009791
4-3-2/M820.884931
4-3/M821.115911
5-3/M821.048471
6-2/M821.062021
6-3/M821.030981
7-1/M820.940271
7-2/M821.036051
9-3-2/M820.83431

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.985271
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.02051
IL12-4/WTpooled1.105570.891
IL1-4/WTpooled0.89143
WT/WTpooled1.047181

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.914930.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.938771
DC3000/delta hrp 6h0.900650.95
DC3000/delta hrp 12h1.19021
DC3000/delta hrp 24h0.894510.464

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.177730.102
DC3000 delta B/DC3000 delta AB1.018981

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.998921
Exp 36h1.551350.326
Exp 60h1.095860.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015751
Var 0h0.506631
Var 12h I row2-row11.174420.379
Var 12h NI row2-row10.926020.546
Var 36h I row2-row11.129291
Var 36h NI row2-row10.943860.791
Var 60h I row2-row11.381211
Var 60h NI row2-row11.398840.904
Time course 0hI-0hNI1.078940.764
Time course 12hI-12hNI1.105030.633
Time course 36hI-36hNI0.981510.533
Time course 60hI-60hNI1.131390.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.145280.455
transgenic ySAMdc/azygous control (breaker)0.694980.173
transgenic ySAMdc/azygous control (red)0.932461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.049450.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.041731

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.708770.172
Manapal/WT (break)0.911651
Manapal/WT (red)0.584880.181