Expression of 1-1-5.1.14.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13594 | 0.912 |
27DAP/17DAP | 0.96355 | 0.959 |
39DAP/27DAP | 1.05923 | 0.864 |
41DAP/39DAP | 0.83795 | 0.358 |
42DAP/41DAP | 1.1313 | 0.871 |
43DAP/42DAP | 1.02946 | 1 |
47DAP/43DAP | 1.25582 | 0.49 |
52DAP/47DAP | 0.9779 | 0.875 |
57DAP/52DAP | 1.0597 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12051 | 0.11 |
17DAP/reference | 1.04797 | 0.248 |
27DAP/reference | 1.05719 | 0.299 |
39DAP/reference | 1.02043 | 0.722 |
41DAP/reference | 1.08477 | 0.041 |
42DAP/reference | 1.10535 | 0.015 |
43DAP/reference | 1.06957 | 0.425 |
47DAP/reference | 1.0268 | 0.627 |
52DAP/reference | 1.04112 | 0.663 |
57DAP/reference | 0.89721 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90197 | 0.27 |
27DAP/17DAP | 1.04928 | 0.798 |
39DAP/27DAP | 0.93158 | 0.356 |
41DAP/39DAP | 1.10165 | 0.656 |
42DAP/41DAP | 1.01346 | 1 |
43DAP/42DAP | 1.05104 | 0.052 |
47DAP/43DAP | 0.97024 | 0.712 |
52DAP/47DAP | 0.99299 | 0.951 |
57DAP/52DAP | 1.02578 | 0.864 |
57DAP/7DAP | 1.15527 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97156 | 0.361 |
17DAP/reference | 0.98019 | 0.338 |
27DAP/reference | 0.9775 | 0.171 |
39DAP/reference | 1.04444 | 0.013 |
41DAP/reference | 1.03249 | 0.56 |
42DAP/reference | 1.09051 | 0.132 |
43DAP/reference | 1.04426 | 0.167 |
47DAP/reference | 1.06078 | 0.45 |
52DAP/reference | 0.99636 | 0.802 |
57DAP/reference | 0.99623 | 0.694 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0432 | 0.642 |
17DAP/reference | 1.15961 | 0.072 |
27DAP/reference | 1.02618 | 0.948 |
39DAP/reference | 1.11771 | 0.119 |
41DAP/reference | 1.0021 | 0.666 |
42DAP/reference | 1.03516 | 0.826 |
43DAP/reference | 1.17256 | 0.182 |
47DAP/reference | 1.05913 | 0.112 |
52DAP/reference | 1.08396 | 0.014 |
57DAP/reference | 1.17615 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12279 | 0.74 |
17DAP/reference | 1.11038 | 0.431 |
27DAP/reference | 0.92536 | 0.076 |
39DAP/reference | 1.0416 | 0.39 |
41DAP/reference | 1.00211 | 1 |
42DAP/reference | 0.94345 | 0.134 |
43DAP/reference | 0.92599 | 0.042 |
47DAP/reference | 1.10956 | 0.218 |
52DAP/reference | 0.95542 | 0.493 |
57DAP/reference | 0.99681 | 0.572 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95799 | 1 |
26DAP/20DAP | 1.0278 | 1 |
34DAP/26DAP | 1.06047 | 1 |
51DAP/34DAP | 0.88179 | 0.508 |
52DAP/51DAP | 0.96006 | 1 |
53DAP/52DAP | 1.03129 | 0.91 |
55DAP/53DAP | 1.04056 | 0.922 |
57DAP/55DAP | 1.34367 | 0.079 |
62DAP/57DAP | 0.97974 | 0.994 |
68DAP/62DAP | 1.29691 | 0.616 |
68DAP/14DAP | 0.9626 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97096 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.2986 | 0.331 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.96507 | |
12-2/M82 | 0.20204 | |
12-4/M82 | 1.06079 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.9003 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.0582 | 0.444 |
4-3-2/M82 | 0.81311 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.1351 | 0.572 |
6-2/M82 | 1.00171 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.87593 | |
9-3-2/M82 | 0.85668 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93598 | 0.321 |
IL2-6/WTpooled | 1.08798 | 0.584 |
IL7-5/WTpooled | 0.8932 | 1 |
IL7-3/WTpooled | 0.91712 | 1 |
IL12-4/WTpooled | 1.1017 | 1 |
IL1-4/WTpooled | 0.98775 | 1 |
WT/WTpooled | 1.17642 | 0.855 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96123 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08536 | 1 |
DC3000/delta hrp 6h | 0.65846 | 0.81 |
DC3000/delta hrp 12h | 1.10088 | 1 |
DC3000/delta hrp 24h | 0.98327 | 0.945 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.97875 | 1 |
DC3000 delta B/DC3000 delta AB | 0.95829 | 0.543 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.26868 | 1 |
Exp 36h | 0.7988 | 0.699 |
Exp 60h | 0.71264 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04322 | 1 |
Var 0h | 0.95408 | 1 |
Var 12h I row2-row1 | 1.03084 | 0.736 |
Var 12h NI row2-row1 | 0.85834 | 0.627 |
Var 36h I row2-row1 | 1.16835 | 1 |
Var 36h NI row2-row1 | 0.9491 | 0.743 |
Var 60h I row2-row1 | 0.98011 | 0.952 |
Var 60h NI row2-row1 | 1.31133 | 0.904 |
Time course 0hI-0hNI | 1.08546 | 0.537 |
Time course 12hI-12hNI | 1.17397 | 0.025 |
Time course 36hI-36hNI | 1.05409 | 0.147 |
Time course 60hI-60hNI | 1.13906 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98418 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.2032 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.09117 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02659 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.47896 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.24862 | 1 |
Manapal/WT (break) | 1.0828 | 0.381 |
Manapal/WT (red) | N/A | N/A |
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