Expression of 1-1-5.1.14.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.135940.912
27DAP/17DAP0.963550.959
39DAP/27DAP1.059230.864
41DAP/39DAP0.837950.358
42DAP/41DAP1.13130.871
43DAP/42DAP1.029461
47DAP/43DAP1.255820.49
52DAP/47DAP0.97790.875
57DAP/52DAP1.05970.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.120510.11
17DAP/reference1.047970.248
27DAP/reference1.057190.299
39DAP/reference1.020430.722
41DAP/reference1.084770.041
42DAP/reference1.105350.015
43DAP/reference1.069570.425
47DAP/reference1.02680.627
52DAP/reference1.041120.663
57DAP/reference0.897210.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.901970.27
27DAP/17DAP1.049280.798
39DAP/27DAP0.931580.356
41DAP/39DAP1.101650.656
42DAP/41DAP1.013461
43DAP/42DAP1.051040.052
47DAP/43DAP0.970240.712
52DAP/47DAP0.992990.951
57DAP/52DAP1.025780.864
57DAP/7DAP1.155270.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.971560.361
17DAP/reference0.980190.338
27DAP/reference0.97750.171
39DAP/reference1.044440.013
41DAP/reference1.032490.56
42DAP/reference1.090510.132
43DAP/reference1.044260.167
47DAP/reference1.060780.45
52DAP/reference0.996360.802
57DAP/reference0.996230.694

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04320.642
17DAP/reference1.159610.072
27DAP/reference1.026180.948
39DAP/reference1.117710.119
41DAP/reference1.00210.666
42DAP/reference1.035160.826
43DAP/reference1.172560.182
47DAP/reference1.059130.112
52DAP/reference1.083960.014
57DAP/reference1.176150.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122790.74
17DAP/reference1.110380.431
27DAP/reference0.925360.076
39DAP/reference1.04160.39
41DAP/reference1.002111
42DAP/reference0.943450.134
43DAP/reference0.925990.042
47DAP/reference1.109560.218
52DAP/reference0.955420.493
57DAP/reference0.996810.572

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.957991
26DAP/20DAP1.02781
34DAP/26DAP1.060471
51DAP/34DAP0.881790.508
52DAP/51DAP0.960061
53DAP/52DAP1.031290.91
55DAP/53DAP1.040560.922
57DAP/55DAP1.343670.079
62DAP/57DAP0.979740.994
68DAP/62DAP1.296910.616
68DAP/14DAP0.96261

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.970960.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.29860.331
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.96507
12-2/M820.20204
12-4/M821.060791
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.9003
4-1-1/M82N/AN/A
4-1/M821.05820.444
4-3-2/M820.81311
4-3/M82N/AN/A
5-3/M821.13510.572
6-2/M821.00171
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.87593
9-3-2/M820.856680.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.935980.321
IL2-6/WTpooled1.087980.584
IL7-5/WTpooled0.89321
IL7-3/WTpooled0.917121
IL12-4/WTpooled1.10171
IL1-4/WTpooled0.987751
WT/WTpooled1.176420.855

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.961231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.085361
DC3000/delta hrp 6h0.658460.81
DC3000/delta hrp 12h1.100881
DC3000/delta hrp 24h0.983270.945

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.978751
DC3000 delta B/DC3000 delta AB0.958290.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.268681
Exp 36h0.79880.699
Exp 60h0.712640.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.043221
Var 0h0.954081
Var 12h I row2-row11.030840.736
Var 12h NI row2-row10.858340.627
Var 36h I row2-row11.168351
Var 36h NI row2-row10.94910.743
Var 60h I row2-row10.980110.952
Var 60h NI row2-row11.311330.904
Time course 0hI-0hNI1.085460.537
Time course 12hI-12hNI1.173970.025
Time course 36hI-36hNI1.054090.147
Time course 60hI-60hNI1.139060.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.984180.454
transgenic ySAMdc/azygous control (breaker)1.20320.248
transgenic ySAMdc/azygous control (red)1.091170.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026590.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.478960.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.248621
Manapal/WT (break)1.08280.381
Manapal/WT (red)N/AN/A