Expression of 1-1-5.1.14.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.777880.128
27DAP/17DAP0.994590.836
39DAP/27DAP1.065631
41DAP/39DAP1.031581
42DAP/41DAP0.833361
43DAP/42DAP0.704690.524
47DAP/43DAP0.977890.788
52DAP/47DAP1.556550.53
57DAP/52DAP0.966540.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.016680.693
17DAP/reference0.945110.448
27DAP/reference0.987540.694
39DAP/reference0.864810.03
41DAP/reference0.873010.154
42DAP/reference0.806720.012
43DAP/reference0.891810.107
47DAP/reference0.946560.207
52DAP/reference0.992940.654
57DAP/reference1.161810.073

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.90830.402
27DAP/17DAP0.986830.919
39DAP/27DAP0.778620.102
41DAP/39DAP0.911240.68
42DAP/41DAP1.059820.727
43DAP/42DAP0.902890.431
47DAP/43DAP0.947230.787
52DAP/47DAP0.911170.528
57DAP/52DAP0.999870.887
57DAP/7DAP0.802410.063

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234920.112
17DAP/reference1.10780.328
27DAP/reference1.157030.049
39DAP/reference1.199270.411
41DAP/reference1.27480.126
42DAP/reference0.989620.641
43DAP/reference0.953350.368
47DAP/reference1.014651
52DAP/reference1.023081
57DAP/reference0.859310.132

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.935630.441
17DAP/reference0.978390.594
27DAP/reference0.984160.554
39DAP/reference0.893570.156
41DAP/reference0.975150.441
42DAP/reference0.929320.237
43DAP/reference0.948710.423
47DAP/reference0.895980.11
52DAP/reference0.886930.239
57DAP/reference0.726980.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115430.119
17DAP/reference0.947710.364
27DAP/reference1.257350.043
39DAP/reference0.904960.179
41DAP/reference0.952020.459
42DAP/reference0.94640.361
43DAP/reference0.973020.545
47DAP/reference0.804990.038
52DAP/reference1.140680.77
57DAP/reference1.005990.888

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.76330.752
26DAP/20DAP1.294890.647
34DAP/26DAP0.944850.874
51DAP/34DAP1.202540.387
52DAP/51DAP1.020040.939
53DAP/52DAP0.757090.066
55DAP/53DAP0.619490.05
57DAP/55DAP0.856730.49
62DAP/57DAP1.113091
68DAP/62DAP1.356830.398
68DAP/14DAP1.028011

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.543220.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.646150.059
Mature Green Tomato/Ripe Tomato1.579880.086
Immature Eggplant/Mature Eggplant0.761650.117
Ripe Pepper/Ripe Tomato1.003451
Mature Eggplant/Ripe Tomato2.85610.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.105411
1-1-2/M820.995681
12-2/M82N/AN/A
12-4/M820.891460.619
1-3/M82N/AN/A
2-1-1/M820.61935
2-1/M821.17905
2-6/M821.16341
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.90387
4-3-2/M82N/AN/A
4-3/M820.482080.466
5-3/M820.940551
6-2/M82N/AN/A
6-3/M821.22318
7-1/M821.2109
7-2/M821.15481
9-3-2/M821.251941

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.672590.257
IL2-6/WTpooled0.680160.358
IL7-5/WTpooled1.471030.75
IL7-3/WTpooled1.756840.362
IL12-4/WTpooled1.224320.516
IL1-4/WTpooled0.947131
WT/WTpooled0.976621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.89590.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.210450.75
DC3000/delta hrp 6h0.98220.95
DC3000/delta hrp 12h0.872721
DC3000/delta hrp 24h0.774170.036

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.860060.117
DC3000 delta B/DC3000 delta AB0.965770.745

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.813871
Exp 36h1.002431
Exp 60h0.947230.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.024871
Var 0h2.691571
Var 12h I row2-row11.180260.544
Var 12h NI row2-row11.208860.34
Var 36h I row2-row10.967751
Var 36h NI row2-row11.483661
Var 60h I row2-row10.816640.285
Var 60h NI row2-row11.100931
Time course 0hI-0hNI0.987090.97
Time course 12hI-12hNI0.972170.79
Time course 36hI-36hNI0.97530.504
Time course 60hI-60hNI1.110780.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.954480.485
transgenic ySAMdc/azygous control (breaker)0.769440.251
transgenic ySAMdc/azygous control (red)1.251960.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.9680.5

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.11311

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.365141
Manapal/WT (break)1.898540.183
Manapal/WT (red)1.103881