Expression of 1-1-5.1.14.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77788 | 0.128 |
27DAP/17DAP | 0.99459 | 0.836 |
39DAP/27DAP | 1.06563 | 1 |
41DAP/39DAP | 1.03158 | 1 |
42DAP/41DAP | 0.83336 | 1 |
43DAP/42DAP | 0.70469 | 0.524 |
47DAP/43DAP | 0.97789 | 0.788 |
52DAP/47DAP | 1.55655 | 0.53 |
57DAP/52DAP | 0.96654 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01668 | 0.693 |
17DAP/reference | 0.94511 | 0.448 |
27DAP/reference | 0.98754 | 0.694 |
39DAP/reference | 0.86481 | 0.03 |
41DAP/reference | 0.87301 | 0.154 |
42DAP/reference | 0.80672 | 0.012 |
43DAP/reference | 0.89181 | 0.107 |
47DAP/reference | 0.94656 | 0.207 |
52DAP/reference | 0.99294 | 0.654 |
57DAP/reference | 1.16181 | 0.073 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9083 | 0.402 |
27DAP/17DAP | 0.98683 | 0.919 |
39DAP/27DAP | 0.77862 | 0.102 |
41DAP/39DAP | 0.91124 | 0.68 |
42DAP/41DAP | 1.05982 | 0.727 |
43DAP/42DAP | 0.90289 | 0.431 |
47DAP/43DAP | 0.94723 | 0.787 |
52DAP/47DAP | 0.91117 | 0.528 |
57DAP/52DAP | 0.99987 | 0.887 |
57DAP/7DAP | 0.80241 | 0.063 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23492 | 0.112 |
17DAP/reference | 1.1078 | 0.328 |
27DAP/reference | 1.15703 | 0.049 |
39DAP/reference | 1.19927 | 0.411 |
41DAP/reference | 1.2748 | 0.126 |
42DAP/reference | 0.98962 | 0.641 |
43DAP/reference | 0.95335 | 0.368 |
47DAP/reference | 1.01465 | 1 |
52DAP/reference | 1.02308 | 1 |
57DAP/reference | 0.85931 | 0.132 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93563 | 0.441 |
17DAP/reference | 0.97839 | 0.594 |
27DAP/reference | 0.98416 | 0.554 |
39DAP/reference | 0.89357 | 0.156 |
41DAP/reference | 0.97515 | 0.441 |
42DAP/reference | 0.92932 | 0.237 |
43DAP/reference | 0.94871 | 0.423 |
47DAP/reference | 0.89598 | 0.11 |
52DAP/reference | 0.88693 | 0.239 |
57DAP/reference | 0.72698 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11543 | 0.119 |
17DAP/reference | 0.94771 | 0.364 |
27DAP/reference | 1.25735 | 0.043 |
39DAP/reference | 0.90496 | 0.179 |
41DAP/reference | 0.95202 | 0.459 |
42DAP/reference | 0.9464 | 0.361 |
43DAP/reference | 0.97302 | 0.545 |
47DAP/reference | 0.80499 | 0.038 |
52DAP/reference | 1.14068 | 0.77 |
57DAP/reference | 1.00599 | 0.888 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.7633 | 0.752 |
26DAP/20DAP | 1.29489 | 0.647 |
34DAP/26DAP | 0.94485 | 0.874 |
51DAP/34DAP | 1.20254 | 0.387 |
52DAP/51DAP | 1.02004 | 0.939 |
53DAP/52DAP | 0.75709 | 0.066 |
55DAP/53DAP | 0.61949 | 0.05 |
57DAP/55DAP | 0.85673 | 0.49 |
62DAP/57DAP | 1.11309 | 1 |
68DAP/62DAP | 1.35683 | 0.398 |
68DAP/14DAP | 1.02801 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.54322 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.64615 | 0.059 |
Mature Green Tomato/Ripe Tomato | 1.57988 | 0.086 |
Immature Eggplant/Mature Eggplant | 0.76165 | 0.117 |
Ripe Pepper/Ripe Tomato | 1.00345 | 1 |
Mature Eggplant/Ripe Tomato | 2.8561 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10541 | 1 |
1-1-2/M82 | 0.99568 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.89146 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.61935 | |
2-1/M82 | 1.17905 | |
2-6/M82 | 1.1634 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.90387 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.48208 | 0.466 |
5-3/M82 | 0.94055 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.22318 | |
7-1/M82 | 1.2109 | |
7-2/M82 | 1.15481 | |
9-3-2/M82 | 1.25194 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.67259 | 0.257 |
IL2-6/WTpooled | 0.68016 | 0.358 |
IL7-5/WTpooled | 1.47103 | 0.75 |
IL7-3/WTpooled | 1.75684 | 0.362 |
IL12-4/WTpooled | 1.22432 | 0.516 |
IL1-4/WTpooled | 0.94713 | 1 |
WT/WTpooled | 0.97662 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8959 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.21045 | 0.75 |
DC3000/delta hrp 6h | 0.9822 | 0.95 |
DC3000/delta hrp 12h | 0.87272 | 1 |
DC3000/delta hrp 24h | 0.77417 | 0.036 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86006 | 0.117 |
DC3000 delta B/DC3000 delta AB | 0.96577 | 0.745 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81387 | 1 |
Exp 36h | 1.00243 | 1 |
Exp 60h | 0.94723 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02487 | 1 |
Var 0h | 2.69157 | 1 |
Var 12h I row2-row1 | 1.18026 | 0.544 |
Var 12h NI row2-row1 | 1.20886 | 0.34 |
Var 36h I row2-row1 | 0.96775 | 1 |
Var 36h NI row2-row1 | 1.48366 | 1 |
Var 60h I row2-row1 | 0.81664 | 0.285 |
Var 60h NI row2-row1 | 1.10093 | 1 |
Time course 0hI-0hNI | 0.98709 | 0.97 |
Time course 12hI-12hNI | 0.97217 | 0.79 |
Time course 36hI-36hNI | 0.9753 | 0.504 |
Time course 60hI-60hNI | 1.11078 | 0.495 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95448 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.76944 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.25196 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.968 | 0.5 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1131 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.36514 | 1 |
Manapal/WT (break) | 1.89854 | 0.183 |
Manapal/WT (red) | 1.10388 | 1 |
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