Expression of 1-1-5.1.14.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988180.722
27DAP/17DAP1.589940.366
39DAP/27DAP0.939080.652
41DAP/39DAP0.978750.852
42DAP/41DAP0.998851
43DAP/42DAP1.14271
47DAP/43DAP1.089470.979
52DAP/47DAP0.788660.5
57DAP/52DAP0.991060.978

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.871060.068
17DAP/reference0.953420.448
27DAP/reference1.141440.175
39DAP/reference1.02880.747
41DAP/reference1.051850.91
42DAP/reference1.007281
43DAP/reference0.939280.41
47DAP/reference0.919250.065
52DAP/reference0.919880.215
57DAP/reference0.935310.176

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.973980.679
27DAP/17DAP1.100540.831
39DAP/27DAP1.221340.27
41DAP/39DAP1.315050.284
42DAP/41DAP0.784360.35
43DAP/42DAP1.215760.086
47DAP/43DAP1.15450.593
52DAP/47DAP1.093950.681
57DAP/52DAP0.981960.789
57DAP/7DAP0.716881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.015951
17DAP/reference1.096110.032
27DAP/reference0.863580.051
39DAP/reference0.977240.474
41DAP/reference0.975560.449
42DAP/reference0.995860.713
43DAP/reference0.946690.166
47DAP/reference0.80510.03
52DAP/reference0.858130.163
57DAP/reference1.04750.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959840.592
17DAP/reference0.928250.41
27DAP/reference0.956680.438
39DAP/reference0.859540.119
41DAP/reference0.992620.601
42DAP/reference1.178230.274
43DAP/reference0.994980.736
47DAP/reference1.280430.067
52DAP/reference0.913210.203
57DAP/reference1.679090.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959550.489
17DAP/reference1.027270.865
27DAP/reference1.068370.125
39DAP/reference0.935890.199
41DAP/reference1.025550.984
42DAP/reference0.923370.087
43DAP/reference0.850040.084
47DAP/reference0.918480.335
52DAP/reference0.839940.256
57DAP/reference0.93220.247

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.125480.966
26DAP/20DAP0.925181
34DAP/26DAP1.649760.819
51DAP/34DAP1.167780.84
52DAP/51DAP0.97911
53DAP/52DAP1.86330.284
55DAP/53DAP1.207150.719
57DAP/55DAP1.053850.986
62DAP/57DAP1.01761
68DAP/62DAP1.894080.017
68DAP/14DAP1.845260.223

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.788080.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.76838
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.011491

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.261921
1-1-2/M820.78449
12-2/M82N/AN/A
12-4/M821.504241
1-3/M820.61644
2-1-1/M821.015421
2-1/M82N/AN/A
2-6/M821.179760.594
3-2/M82N/AN/A
4-1-1/M820.98321
4-1/M821.42867
4-3-2/M821.27645
4-3/M820.99484
5-3/M820.883471
6-2/M82N/AN/A
6-3/M821.094671
7-1/M82N/AN/A
7-2/M820.83651
9-3-2/M820.95862

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.033411
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.976591
IL12-4/WTpooled1.016140.891
IL1-4/WTpooled1.04319
WT/WTpooled1.009141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.390581

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.987231
DC3000/delta hrp 6h1.425491
DC3000/delta hrp 12h1.046441
DC3000/delta hrp 24h1.250640.113

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.51424

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.01581
Exp 36h1.667390.693
Exp 60h1.475560.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.92049
Var 0h0.993851
Var 12h I row2-row11.744970.208
Var 12h NI row2-row11.086241
Var 36h I row2-row10.985331
Var 36h NI row2-row10.958911
Var 60h I row2-row11.12241
Var 60h NI row2-row10.5240.306
Time course 0hI-0hNI1.038940.903
Time course 12hI-12hNI2.903650.006
Time course 36hI-36hNI2.987310.007
Time course 60hI-60hNI2.840720.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.780150.314
transgenic ySAMdc/azygous control (breaker)1.026391
transgenic ySAMdc/azygous control (red)1.328520.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.994450.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.520450.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.986111
Manapal/WT (break)0.708050.333
Manapal/WT (red)0.665080.187