Expression of 1-1-5.1.16.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.978020.811
27DAP/17DAP0.979960.973
39DAP/27DAP1.141410.768
41DAP/39DAP0.973040.773
42DAP/41DAP1.096020.978
43DAP/42DAP0.996450.937
47DAP/43DAP1.072680.943
52DAP/47DAP0.965550.8
57DAP/52DAP1.147510.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.006411
17DAP/reference0.999390.957
27DAP/reference0.973770.417
39DAP/reference1.009170.76
41DAP/reference1.012540.91
42DAP/reference1.028020.398
43DAP/reference1.011420.866
47DAP/reference1.040520.199
52DAP/reference1.073660.286
57DAP/reference1.182170.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.026950.736
27DAP/17DAP0.999111
39DAP/27DAP0.99010.964
41DAP/39DAP0.925410.747
42DAP/41DAP1.007831
43DAP/42DAP0.970040.503
47DAP/43DAP1.012660.934
52DAP/47DAP0.978770.907
57DAP/52DAP0.934440.507
57DAP/7DAP0.987661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.940710.183
17DAP/reference0.950750.094
27DAP/reference0.976770.264
39DAP/reference1.018590.601
41DAP/reference1.124410.062
42DAP/reference1.130540.014
43DAP/reference1.115050.111
47DAP/reference1.010190.932
52DAP/reference1.101720.038
57DAP/reference1.108030.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.964620.564
17DAP/reference1.004991
27DAP/reference1.04780.463
39DAP/reference0.967990.359
41DAP/reference1.01861
42DAP/reference0.973810.433
43DAP/reference0.988430.721
47DAP/reference1.046090.169
52DAP/reference1.014550.789
57DAP/reference0.996470.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.939780.068
17DAP/reference0.999390.918
27DAP/reference0.977380.376
39DAP/reference1.029810.451
41DAP/reference0.980470.56
42DAP/reference0.99621
43DAP/reference1.006121
47DAP/reference1.024850.63
52DAP/reference1.000420.946
57DAP/reference1.049450.47

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.989711
26DAP/20DAP1.248250.394
34DAP/26DAP0.981790.991
51DAP/34DAP1.029130.854
52DAP/51DAP1.08730.676
53DAP/52DAP1.039370.901
55DAP/53DAP1.173220.236
57DAP/55DAP0.920330.698
62DAP/57DAP1.023760.833
68DAP/62DAP0.97080.914
68DAP/14DAP1.209440.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.982990.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.938190.605
Mature Green Tomato/Ripe Tomato1.030680.752
Immature Eggplant/Mature Eggplant1.282970.142
Ripe Pepper/Ripe Tomato1.362771
Mature Eggplant/Ripe Tomato1.055311

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.921370.907
1-1-2/M820.882881
12-2/M820.937790.955
12-4/M821.008441
1-3/M821.012111
2-1-1/M820.894260.92
2-1/M820.974861
2-6/M820.995411
3-2/M820.935561
4-1-1/M821.011861
4-1/M820.866211
4-3-2/M820.877770.698
4-3/M820.923570.72
5-3/M820.966481
6-2/M821.045471
6-3/M821.036111
7-1/M821.05938
7-2/M820.927950.881
9-3-2/M820.911760.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.541770.348
IL7-5/WTpooled0.79358
IL7-3/WTpooled0.929930.31
IL12-4/WTpooled1.199460.737
IL1-4/WTpooled0.988561
WT/WTpooled1.033281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.151550.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.92440.941
DC3000/delta hrp 6h1.395971
DC3000/delta hrp 12h0.923561
DC3000/delta hrp 24h1.064570.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.923920.46
DC3000 delta B/DC3000 delta AB0.947310.431

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.991491
Exp 36h0.948720.879
Exp 60h0.926290.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007051
Var 0h2.02460.98
Var 12h I row2-row11.180660.272
Var 12h NI row2-row11.010321
Var 36h I row2-row11.043511
Var 36h NI row2-row11.085930.482
Var 60h I row2-row10.663050.832
Var 60h NI row2-row11.081980.904
Time course 0hI-0hNI1.013391
Time course 12hI-12hNI1.045570.762
Time course 36hI-36hNI0.978440.524
Time course 60hI-60hNI0.914030.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.922110.454
transgenic ySAMdc/azygous control (breaker)1.474150.248
transgenic ySAMdc/azygous control (red)1.236940.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.988730.343

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.227610.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.931891
Manapal/WT (break)0.936151
Manapal/WT (red)0.989970.863