Expression of 1-1-5.1.16.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97802 | 0.811 |
27DAP/17DAP | 0.97996 | 0.973 |
39DAP/27DAP | 1.14141 | 0.768 |
41DAP/39DAP | 0.97304 | 0.773 |
42DAP/41DAP | 1.09602 | 0.978 |
43DAP/42DAP | 0.99645 | 0.937 |
47DAP/43DAP | 1.07268 | 0.943 |
52DAP/47DAP | 0.96555 | 0.8 |
57DAP/52DAP | 1.14751 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00641 | 1 |
17DAP/reference | 0.99939 | 0.957 |
27DAP/reference | 0.97377 | 0.417 |
39DAP/reference | 1.00917 | 0.76 |
41DAP/reference | 1.01254 | 0.91 |
42DAP/reference | 1.02802 | 0.398 |
43DAP/reference | 1.01142 | 0.866 |
47DAP/reference | 1.04052 | 0.199 |
52DAP/reference | 1.07366 | 0.286 |
57DAP/reference | 1.18217 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02695 | 0.736 |
27DAP/17DAP | 0.99911 | 1 |
39DAP/27DAP | 0.9901 | 0.964 |
41DAP/39DAP | 0.92541 | 0.747 |
42DAP/41DAP | 1.00783 | 1 |
43DAP/42DAP | 0.97004 | 0.503 |
47DAP/43DAP | 1.01266 | 0.934 |
52DAP/47DAP | 0.97877 | 0.907 |
57DAP/52DAP | 0.93444 | 0.507 |
57DAP/7DAP | 0.98766 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94071 | 0.183 |
17DAP/reference | 0.95075 | 0.094 |
27DAP/reference | 0.97677 | 0.264 |
39DAP/reference | 1.01859 | 0.601 |
41DAP/reference | 1.12441 | 0.062 |
42DAP/reference | 1.13054 | 0.014 |
43DAP/reference | 1.11505 | 0.111 |
47DAP/reference | 1.01019 | 0.932 |
52DAP/reference | 1.10172 | 0.038 |
57DAP/reference | 1.10803 | 0.17 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96462 | 0.564 |
17DAP/reference | 1.00499 | 1 |
27DAP/reference | 1.0478 | 0.463 |
39DAP/reference | 0.96799 | 0.359 |
41DAP/reference | 1.0186 | 1 |
42DAP/reference | 0.97381 | 0.433 |
43DAP/reference | 0.98843 | 0.721 |
47DAP/reference | 1.04609 | 0.169 |
52DAP/reference | 1.01455 | 0.789 |
57DAP/reference | 0.99647 | 0.834 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93978 | 0.068 |
17DAP/reference | 0.99939 | 0.918 |
27DAP/reference | 0.97738 | 0.376 |
39DAP/reference | 1.02981 | 0.451 |
41DAP/reference | 0.98047 | 0.56 |
42DAP/reference | 0.9962 | 1 |
43DAP/reference | 1.00612 | 1 |
47DAP/reference | 1.02485 | 0.63 |
52DAP/reference | 1.00042 | 0.946 |
57DAP/reference | 1.04945 | 0.47 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98971 | 1 |
26DAP/20DAP | 1.24825 | 0.394 |
34DAP/26DAP | 0.98179 | 0.991 |
51DAP/34DAP | 1.02913 | 0.854 |
52DAP/51DAP | 1.0873 | 0.676 |
53DAP/52DAP | 1.03937 | 0.901 |
55DAP/53DAP | 1.17322 | 0.236 |
57DAP/55DAP | 0.92033 | 0.698 |
62DAP/57DAP | 1.02376 | 0.833 |
68DAP/62DAP | 0.9708 | 0.914 |
68DAP/14DAP | 1.20944 | 0.311 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98299 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.93819 | 0.605 |
Mature Green Tomato/Ripe Tomato | 1.03068 | 0.752 |
Immature Eggplant/Mature Eggplant | 1.28297 | 0.142 |
Ripe Pepper/Ripe Tomato | 1.36277 | 1 |
Mature Eggplant/Ripe Tomato | 1.05531 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92137 | 0.907 |
1-1-2/M82 | 0.88288 | 1 |
12-2/M82 | 0.93779 | 0.955 |
12-4/M82 | 1.00844 | 1 |
1-3/M82 | 1.01211 | 1 |
2-1-1/M82 | 0.89426 | 0.92 |
2-1/M82 | 0.97486 | 1 |
2-6/M82 | 0.99541 | 1 |
3-2/M82 | 0.93556 | 1 |
4-1-1/M82 | 1.01186 | 1 |
4-1/M82 | 0.86621 | 1 |
4-3-2/M82 | 0.87777 | 0.698 |
4-3/M82 | 0.92357 | 0.72 |
5-3/M82 | 0.96648 | 1 |
6-2/M82 | 1.04547 | 1 |
6-3/M82 | 1.03611 | 1 |
7-1/M82 | 1.05938 | |
7-2/M82 | 0.92795 | 0.881 |
9-3-2/M82 | 0.91176 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.54177 | 0.348 |
IL7-5/WTpooled | 0.79358 | |
IL7-3/WTpooled | 0.92993 | 0.31 |
IL12-4/WTpooled | 1.19946 | 0.737 |
IL1-4/WTpooled | 0.98856 | 1 |
WT/WTpooled | 1.03328 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15155 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9244 | 0.941 |
DC3000/delta hrp 6h | 1.39597 | 1 |
DC3000/delta hrp 12h | 0.92356 | 1 |
DC3000/delta hrp 24h | 1.06457 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92392 | 0.46 |
DC3000 delta B/DC3000 delta AB | 0.94731 | 0.431 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99149 | 1 |
Exp 36h | 0.94872 | 0.879 |
Exp 60h | 0.92629 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00705 | 1 |
Var 0h | 2.0246 | 0.98 |
Var 12h I row2-row1 | 1.18066 | 0.272 |
Var 12h NI row2-row1 | 1.01032 | 1 |
Var 36h I row2-row1 | 1.04351 | 1 |
Var 36h NI row2-row1 | 1.08593 | 0.482 |
Var 60h I row2-row1 | 0.66305 | 0.832 |
Var 60h NI row2-row1 | 1.08198 | 0.904 |
Time course 0hI-0hNI | 1.01339 | 1 |
Time course 12hI-12hNI | 1.04557 | 0.762 |
Time course 36hI-36hNI | 0.97844 | 0.524 |
Time course 60hI-60hNI | 0.91403 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92211 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.47415 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.23694 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98873 | 0.343 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.22761 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93189 | 1 |
Manapal/WT (break) | 0.93615 | 1 |
Manapal/WT (red) | 0.98997 | 0.863 |
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