Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.17.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.42091	0.523
27DAP/17DAP	1.18326	0.809
39DAP/27DAP	1.10187	0.899
41DAP/39DAP	0.83328	0.518
42DAP/41DAP	0.90209	1
43DAP/42DAP	1.0756	0.945
47DAP/43DAP	1.35983	0.313
52DAP/47DAP	0.99012	0.845
57DAP/52DAP	0.96926	0.957

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.21082	0.46
17DAP/reference	0.95618	0.503
27DAP/reference	1.03988	0.806
39DAP/reference	1.05539	0.445
41DAP/reference	1.05807	0.552
42DAP/reference	1.06282	0.656
43DAP/reference	0.96678	0.594
47DAP/reference	1.1719	0.005
52DAP/reference	1.48432	0.065
57DAP/reference	1.28346	0.186

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.36861	0.422
27DAP/17DAP	1.15233	0.554
39DAP/27DAP	1.06652	0.691
41DAP/39DAP	1.17258	0.748
42DAP/41DAP	1.02539	0.746
43DAP/42DAP	1.11797	0.413
47DAP/43DAP	1.21171	0.563
52DAP/47DAP	1.11037	0.703
57DAP/52DAP	1.34127	0.123
57DAP/7DAP	0.8702	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96185	0.27
17DAP/reference	0.95076	0.389
27DAP/reference	1.00123	0.614
39DAP/reference	0.68434	0.013
41DAP/reference	0.77614	0.047
42DAP/reference	0.86835	0.169
43DAP/reference	0.81747	0.038
47DAP/reference	1.04957	0.948
52DAP/reference	0.78113	0.016
57DAP/reference	0.80666	0.039

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96408	0.669
17DAP/reference	1.01221	0.673
27DAP/reference	1.11255	1
39DAP/reference	1.17331	0.099
41DAP/reference	1.32675	0.07
42DAP/reference	1.16216	0.324
43DAP/reference	0.93472	0.385
47DAP/reference	1.04119	0.841
52DAP/reference	1.11435	0.747
57DAP/reference	1.28255	0.64

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.90133	0.23
17DAP/reference	1.05131	0.784
27DAP/reference	0.91035	0.286
39DAP/reference	0.92467	0.328
41DAP/reference	0.8166	0.107
42DAP/reference	1.05314	0.552
43DAP/reference	1.06024	1
47DAP/reference	1.40083	0.085
52DAP/reference	0.92329	0.464
57DAP/reference	1.39798	0.196

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.01745	1
26DAP/20DAP	0.7134	0.512
34DAP/26DAP	1.4353	0.819
51DAP/34DAP	0.95121	0.737
52DAP/51DAP	1.07613	1
53DAP/52DAP	1.03707	0.868
55DAP/53DAP	0.9283	0.709
57DAP/55DAP	1.15063	0.955
62DAP/57DAP	0.83316	0.28
68DAP/62DAP	1.1421	0.864
68DAP/14DAP	0.68774	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.53518	0.246

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.94409	0.569
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	0.75686

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	1.05551
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.31918
IL2-6/WTpooled	1.1324	0.788
IL7-5/WTpooled	0.25458
IL7-3/WTpooled	0.95853	1
IL12-4/WTpooled	0.89715	0.71
IL1-4/WTpooled	1.31817	0.399
WT/WTpooled	0.96803	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.73839

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.95678
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	0.46241
DC3000/delta hrp 24h	1.661	0.192

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.77661	0.388
DC3000 delta B/DC3000 delta AB	1.01006

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.14982	1
Var 0h	0.796	0.936
Var 12h I row2-row1	0.93322	0.338
Var 12h NI row2-row1	1.20053	0.649
Var 36h I row2-row1	0.76068	1
Var 36h NI row2-row1	0.6614	0.584
Var 60h I row2-row1	1.08398	1
Var 60h NI row2-row1	0.79692	1
Time course 0hI-0hNI	1.10694	0.833
Time course 12hI-12hNI	1.03592	0.88
Time course 36hI-36hNI	0.92602	0.084
Time course 60hI-60hNI	0.78222	0.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.95187	1
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	1.14188	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A