Expression of 1-1-5.1.17.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18397 | 0.912 |
27DAP/17DAP | 0.91191 | 0.796 |
39DAP/27DAP | 1.24331 | 0.965 |
41DAP/39DAP | 0.57978 | 0.047 |
42DAP/41DAP | 0.90042 | 1 |
43DAP/42DAP | 1.06954 | 1 |
47DAP/43DAP | 0.44481 | 0.049 |
52DAP/47DAP | 1.30006 | 0.407 |
57DAP/52DAP | 1.45548 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36561 | 0.018 |
17DAP/reference | 1.20734 | 0.028 |
27DAP/reference | 1.18273 | 0.045 |
39DAP/reference | 1.11733 | 0.165 |
41DAP/reference | 1.25106 | 0.036 |
42DAP/reference | 1.28978 | 0.005 |
43DAP/reference | 1.12102 | 0.382 |
47DAP/reference | 1.31078 | 0.01 |
52DAP/reference | 1.63803 | 0.011 |
57DAP/reference | 1.33722 | 0.035 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86991 | 0.105 |
27DAP/17DAP | 1.0819 | 0.686 |
39DAP/27DAP | 0.79831 | 0.038 |
41DAP/39DAP | 1.21723 | 1 |
42DAP/41DAP | 1.0517 | 0.999 |
43DAP/42DAP | 0.86149 | 0.039 |
47DAP/43DAP | 0.92067 | 0.382 |
52DAP/47DAP | 0.60122 | 0.041 |
57DAP/52DAP | 0.83493 | 0.375 |
57DAP/7DAP | 0.34603 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03055 | 0.91 |
17DAP/reference | 0.78044 | 0.021 |
27DAP/reference | 0.75692 | 0.013 |
39DAP/reference | 0.89677 | 0.17 |
41DAP/reference | 0.89099 | 0.094 |
42DAP/reference | 0.98898 | 0.582 |
43DAP/reference | 0.90681 | 0.241 |
47DAP/reference | 1.25813 | 0.155 |
52DAP/reference | 0.80832 | 0.023 |
57DAP/reference | 0.74894 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00406 | 0.93 |
17DAP/reference | 1.25184 | 0.101 |
27DAP/reference | 1.4063 | 0.022 |
39DAP/reference | 1.55144 | 0.041 |
41DAP/reference | 1.82486 | 0.005 |
42DAP/reference | 1.51225 | 0.016 |
43DAP/reference | 1.00445 | 0.681 |
47DAP/reference | 1.23771 | 0.015 |
52DAP/reference | 1.34711 | 0.011 |
57DAP/reference | 1.21302 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99527 | 0.699 |
17DAP/reference | 1.01172 | 1 |
27DAP/reference | 0.96532 | 0.465 |
39DAP/reference | 0.78919 | 0.035 |
41DAP/reference | 0.97845 | 0.618 |
42DAP/reference | 1.25663 | 0.893 |
43DAP/reference | 1.24097 | 1 |
47DAP/reference | 1.2419 | 0.093 |
52DAP/reference | 0.82979 | 0.25 |
57DAP/reference | 2.73397 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90793 | 1 |
26DAP/20DAP | 2.44496 | 0.141 |
34DAP/26DAP | 0.74817 | 0.394 |
51DAP/34DAP | 0.96891 | 0.807 |
52DAP/51DAP | 0.89374 | 1 |
53DAP/52DAP | 0.92641 | 0.587 |
55DAP/53DAP | 0.84142 | 0.252 |
57DAP/55DAP | 1.11834 | 0.947 |
62DAP/57DAP | 0.93627 | 0.871 |
68DAP/62DAP | 1.02629 | 1 |
68DAP/14DAP | 1.21634 | 0.636 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.60475 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.04142 | 0.666 |
Mature Green Tomato/Ripe Tomato | 1.91161 | 0.044 |
Immature Eggplant/Mature Eggplant | 0.86858 | 0.176 |
Ripe Pepper/Ripe Tomato | 0.70824 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.12498 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.54261 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.54704 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88865 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.92256 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.02054 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22831 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 1.49902 | 1 |
DC3000/delta hrp 12h | 1.13367 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.20054 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.39121 | 0.103 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15129 | 1 |
Exp 36h | 0.81494 | 0.699 |
Exp 60h | 1.15927 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00209 | 1 |
Var 0h | 1.21049 | 1 |
Var 12h I row2-row1 | 0.9421 | 0.77 |
Var 12h NI row2-row1 | 1.06909 | 0.649 |
Var 36h I row2-row1 | 1.171 | 0.742 |
Var 36h NI row2-row1 | 0.97567 | 0.61 |
Var 60h I row2-row1 | 0.84642 | 0.292 |
Var 60h NI row2-row1 | 0.8711 | 0.818 |
Time course 0hI-0hNI | 1.08425 | 0.486 |
Time course 12hI-12hNI | 1.04176 | 0.756 |
Time course 36hI-36hNI | 1.43037 | 0.005 |
Time course 60hI-60hNI | 1.47081 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.14801 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 1.01796 | 1 |
transgenic ySAMdc/azygous control (red) | 0.96367 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91884 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.21847 | 0.14 |
Manapal/WT (break) | 0.99987 | 1 |
Manapal/WT (red) | 1.22716 | 0.413 |
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