Expression of 1-1-5.1.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.183970.912
27DAP/17DAP0.911910.796
39DAP/27DAP1.243310.965
41DAP/39DAP0.579780.047
42DAP/41DAP0.900421
43DAP/42DAP1.069541
47DAP/43DAP0.444810.049
52DAP/47DAP1.300060.407
57DAP/52DAP1.455480.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.365610.018
17DAP/reference1.207340.028
27DAP/reference1.182730.045
39DAP/reference1.117330.165
41DAP/reference1.251060.036
42DAP/reference1.289780.005
43DAP/reference1.121020.382
47DAP/reference1.310780.01
52DAP/reference1.638030.011
57DAP/reference1.337220.035

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.869910.105
27DAP/17DAP1.08190.686
39DAP/27DAP0.798310.038
41DAP/39DAP1.217231
42DAP/41DAP1.05170.999
43DAP/42DAP0.861490.039
47DAP/43DAP0.920670.382
52DAP/47DAP0.601220.041
57DAP/52DAP0.834930.375
57DAP/7DAP0.346030.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.030550.91
17DAP/reference0.780440.021
27DAP/reference0.756920.013
39DAP/reference0.896770.17
41DAP/reference0.890990.094
42DAP/reference0.988980.582
43DAP/reference0.906810.241
47DAP/reference1.258130.155
52DAP/reference0.808320.023
57DAP/reference0.748940.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004060.93
17DAP/reference1.251840.101
27DAP/reference1.40630.022
39DAP/reference1.551440.041
41DAP/reference1.824860.005
42DAP/reference1.512250.016
43DAP/reference1.004450.681
47DAP/reference1.237710.015
52DAP/reference1.347110.011
57DAP/reference1.213020.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995270.699
17DAP/reference1.011721
27DAP/reference0.965320.465
39DAP/reference0.789190.035
41DAP/reference0.978450.618
42DAP/reference1.256630.893
43DAP/reference1.240971
47DAP/reference1.24190.093
52DAP/reference0.829790.25
57DAP/reference2.733970.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.907931
26DAP/20DAP2.444960.141
34DAP/26DAP0.748170.394
51DAP/34DAP0.968910.807
52DAP/51DAP0.893741
53DAP/52DAP0.926410.587
55DAP/53DAP0.841420.252
57DAP/55DAP1.118340.947
62DAP/57DAP0.936270.871
68DAP/62DAP1.026291
68DAP/14DAP1.216340.636

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.604750.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.041420.666
Mature Green Tomato/Ripe Tomato1.911610.044
Immature Eggplant/Mature Eggplant0.868580.176
Ripe Pepper/Ripe Tomato0.708240.224
Mature Eggplant/Ripe Tomato1.12498

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.54261
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.54704

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.888650.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.922561
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.020541
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.228310.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.499021
DC3000/delta hrp 12h1.133671
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.200540.042
DC3000 delta B/DC3000 delta AB1.391210.103

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.151291
Exp 36h0.814940.699
Exp 60h1.159271

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002091
Var 0h1.210491
Var 12h I row2-row10.94210.77
Var 12h NI row2-row11.069090.649
Var 36h I row2-row11.1710.742
Var 36h NI row2-row10.975670.61
Var 60h I row2-row10.846420.292
Var 60h NI row2-row10.87110.818
Time course 0hI-0hNI1.084250.486
Time course 12hI-12hNI1.041760.756
Time course 36hI-36hNI1.430370.005
Time course 60hI-60hNI1.470810.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.148010.36
transgenic ySAMdc/azygous control (breaker)1.017961
transgenic ySAMdc/azygous control (red)0.963671

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.918840.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.218470.14
Manapal/WT (break)0.999871
Manapal/WT (red)1.227160.413